Additional file 3 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Additional file 3: of Power in pairs: assessing the statistical value of paired samples in tests for differential expression

John Stevens (691693)
Jennifer Herrick (413154)
Roger Wolff (3471188)
Martha Slattery (3471191)

December 2018

Approximate power contours for continuous data, such as miRNA, based on the (computationally expensi...

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Experiment 1 and normalized saccharin consumption rates in training of Experiment 2.

Andrew T. Marshall (689600)
Angela T. Liu (4248979)
Niall P. Murphy (3663400)
Nigel T. Maidment (375879)
Sean B. Ostlund (408731)

July 2017

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Expe...

Linear mixed effect models.

Guillaume Deffuant (130910)
Thibaut Roubin (17935849)
Armelle Nugier (6204581)
Serge Guimond (6204587)

February 2024

The appendix explains how we computed linear mixed effect models for data structured in different le...

Additional file 2 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Markus Karlsson (3463568)
David JanzĂŠn (3463577)
Lucia Durrieu (3463571)
Alejandro Colman-Lerner (438760)
Maria Kjellsson (3463574)
Gunnar Cedersund (271543)

September 2015

Equations for model 2. A PDF containing the complete equations for the nonlinear model used in the s...

Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Karlsson, Markus
Janzén, David
Durrieu, Lucia
Colman-Lerner, Alejandro
Kjellsson, Maria C.
Cedersund, Gunnar

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Supplemental Material, Appendices_Blozis_Harring - Fitting Nonlinear Mixed-effects Models With Alternative Residual Covariance Structures

Shelley A. Blozis (5569889)
Jeffrey R. Harring (5569892)

July 2018

Supplemental Material, Appendices_Blozis_Harring for Fitting Nonlinear Mixed-effects Models With ...

Nonlinear mixed-effects modelling for single cell estimation: When, why, and how to use it

Karlsson, M.
Janzen, D.L.I.
Durrieu, L.
Colman-Lerner, A.
Kjellsson, M.C.
Cedersund, G.

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Nonlinear mixed-effects modelling for single cell estimation : when, why, and how to use it

Karlsson, Markus
Janzen, David L. I.
Durrieu, Lucia
Colman-Lerner, Alejandro
Kjellsson, Maria C.
Cedersund, Gunnar

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Additional file 3: of Using discrete choice experiments to inform the design of complex interventions

Fern Terris-Prestholt (42804)
Nyasule Neke (799759)
Jonathan Grund (799758)
Marya Plotkin (338631)
Evodius Kuringe (799760)
Haika Osaki (799756)
Jason Ong (3550697)
Joseph Tucker (2830139)
Gerry Mshana (624740)
Hally Mahler (194659)
Helen Weiss (42682)
Mwita Wambura (799757)

March 2019

Comparison of estimators. Table S2. Full model estimates. Figure S1 Comparison of main effects by es...

Appendix A. Table showing results from linear mixed-effects models including liming as a factor.

Anu Eskelinen (2924955)
Susan Harrison (570036)
Maria Tuomi (2924958)

August 2016

Table showing results from linear mixed-effects models including liming as a factor

Additional file 1 of Multiple testing correction in linear mixed models

Jong Joo (3564122)
Farhad Hormozdiari (510050)
Buhm Han (180732)
Eleazar Eskin (108069)

April 2016

Supplementary Figure, Figure S1. Distribution of phenotypes and corresponding statistics from microb...

Additional file 1: of Efficient test for nonlinear dependence of two continuous variables

Yi Wang (32470)
Yi Li (1144)
Hongbao Cao (137526)
Momiao Xiong (86978)
Yin Shugart (3453161)
Li Jin (40265)

August 2015

The power comparison of simulation study across Gaussian noise levels (mean = 0, variance = 1/9, 1/4...

C06ed03.doc 3/12/2009 12:41 PM 1 Outline for Estimation of Fixed Effects in a Simple Mixed Model

December 2014

We derive estimates of parameters for a mixed model. First, parameters are defined in a population. ...

Additional file 3: of Quantifying differences in cell line population dynamics using CellPD

Edwin Juarez (3367271)
Roy Lau (3475163)
Samuel Friedman (3475160)
Ahmadreza Ghaffarizadeh (3475166)
Edmond Jonckheere (2873765)
David Agus (3452687)
Shannon Mumenthaler (3475169)
Paul Macklin (3475172)

September 2016

Growth rate estimates versus sampling frequency. This file contains an alternative representation of...

Additional modelling methods and results.

Dramane Kaba (248358)
Mathurin Koffi (301501)
Lingué Kouakou (4520932)
Emmanuel Kouassi N’Gouan (9375278)
Vincent Djohan (767048)
Fabrice Courtin (294181)
Martial Kassi N’Djetchi (4520929)
Bamoro Coulibaly (4520935)
Guy Pacôme Adingra (16715656)
Djakaridja Berté (11037258)
Bi Tra Dieudonné Ta (16715659)
Minayégninrin Koné (9375275)
Barkissa Mélika Traoré (11868990)
Samuel A. Sutherland (16699356)
Ronald E. Crump (10053205)
Ching-I Huang (391259)
Jason Madan (3471026)
Paul R. Bessell (6760313)
Antoine Barreaux (5676923)
Philippe Solano (211311)
Emily H. Crowley (15065424)
Kat S. Rock (2633992)
Vincent Jamonneau (256809)

July 2023

Details on the model definition, parameter inputs, fitting methodology, posterior parameter distribu...

Additional file 3: of Power in pairs: assessing the statistical value of paired samples in tests for differential expression

John Stevens (691693)
Jennifer Herrick (413154)
Roger Wolff (3471188)
Martha Slattery (3471191)

December 2018

Approximate power contours for continuous data, such as miRNA, based on the (computationally expensi...

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Experiment 1 and normalized saccharin consumption rates in training of Experiment 2.

Andrew T. Marshall (689600)
Angela T. Liu (4248979)
Niall P. Murphy (3663400)
Nigel T. Maidment (375879)
Sean B. Ostlund (408731)

July 2017

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Expe...

Linear mixed effect models.

Guillaume Deffuant (130910)
Thibaut Roubin (17935849)
Armelle Nugier (6204581)
Serge Guimond (6204587)

February 2024

The appendix explains how we computed linear mixed effect models for data structured in different le...

Additional file 2 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Markus Karlsson (3463568)
David JanzĂŠn (3463577)
Lucia Durrieu (3463571)
Alejandro Colman-Lerner (438760)
Maria Kjellsson (3463574)
Gunnar Cedersund (271543)

September 2015

Equations for model 2. A PDF containing the complete equations for the nonlinear model used in the s...

Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Karlsson, Markus
Janzén, David
Durrieu, Lucia
Colman-Lerner, Alejandro
Kjellsson, Maria C.
Cedersund, Gunnar

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Supplemental Material, Appendices_Blozis_Harring - Fitting Nonlinear Mixed-effects Models With Alternative Residual Covariance Structures

Shelley A. Blozis (5569889)
Jeffrey R. Harring (5569892)

July 2018

Supplemental Material, Appendices_Blozis_Harring for Fitting Nonlinear Mixed-effects Models With ...

Nonlinear mixed-effects modelling for single cell estimation: When, why, and how to use it

Karlsson, M.
Janzen, D.L.I.
Durrieu, L.
Colman-Lerner, A.
Kjellsson, M.C.
Cedersund, G.

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Nonlinear mixed-effects modelling for single cell estimation : when, why, and how to use it

Karlsson, Markus
Janzen, David L. I.
Durrieu, Lucia
Colman-Lerner, Alejandro
Kjellsson, Maria C.
Cedersund, Gunnar

January 2015

Background: Studies of cell-to-cell variation have in recent years grown in interest, due to improve...

Additional file 3: of Using discrete choice experiments to inform the design of complex interventions

Fern Terris-Prestholt (42804)
Nyasule Neke (799759)
Jonathan Grund (799758)
Marya Plotkin (338631)
Evodius Kuringe (799760)
Haika Osaki (799756)
Jason Ong (3550697)
Joseph Tucker (2830139)
Gerry Mshana (624740)
Hally Mahler (194659)
Helen Weiss (42682)
Mwita Wambura (799757)

March 2019

Comparison of estimators. Table S2. Full model estimates. Figure S1 Comparison of main effects by es...

Appendix A. Table showing results from linear mixed-effects models including liming as a factor.

Anu Eskelinen (2924955)
Susan Harrison (570036)
Maria Tuomi (2924958)

August 2016

Table showing results from linear mixed-effects models including liming as a factor

Additional file 1 of Multiple testing correction in linear mixed models

Jong Joo (3564122)
Farhad Hormozdiari (510050)
Buhm Han (180732)
Eleazar Eskin (108069)

April 2016

Supplementary Figure, Figure S1. Distribution of phenotypes and corresponding statistics from microb...

Additional file 1: of Efficient test for nonlinear dependence of two continuous variables

Yi Wang (32470)
Yi Li (1144)
Hongbao Cao (137526)
Momiao Xiong (86978)
Yin Shugart (3453161)
Li Jin (40265)

August 2015

The power comparison of simulation study across Gaussian noise levels (mean = 0, variance = 1/9, 1/4...

C06ed03.doc 3/12/2009 12:41 PM 1 Outline for Estimation of Fixed Effects in a Simple Mixed Model

December 2014

We derive estimates of parameters for a mixed model. First, parameters are defined in a population. ...

Additional file 3: of Quantifying differences in cell line population dynamics using CellPD

Edwin Juarez (3367271)
Roy Lau (3475163)
Samuel Friedman (3475160)
Ahmadreza Ghaffarizadeh (3475166)
Edmond Jonckheere (2873765)
David Agus (3452687)
Shannon Mumenthaler (3475169)
Paul Macklin (3475172)

September 2016

Growth rate estimates versus sampling frequency. This file contains an alternative representation of...

Additional modelling methods and results.

Dramane Kaba (248358)
Mathurin Koffi (301501)
Lingué Kouakou (4520932)
Emmanuel Kouassi N’Gouan (9375278)
Vincent Djohan (767048)
Fabrice Courtin (294181)
Martial Kassi N’Djetchi (4520929)
Bamoro Coulibaly (4520935)
Guy Pacôme Adingra (16715656)
Djakaridja Berté (11037258)
Bi Tra Dieudonné Ta (16715659)
Minayégninrin Koné (9375275)
Barkissa Mélika Traoré (11868990)
Samuel A. Sutherland (16699356)
Ronald E. Crump (10053205)
Ching-I Huang (391259)
Jason Madan (3471026)
Paul R. Bessell (6760313)
Antoine Barreaux (5676923)
Philippe Solano (211311)
Emily H. Crowley (15065424)
Kat S. Rock (2633992)
Vincent Jamonneau (256809)

July 2023

Details on the model definition, parameter inputs, fitting methodology, posterior parameter distribu...

Additional file 3: of Power in pairs: assessing the statistical value of paired samples in tests for differential expression

John Stevens (691693)
Jennifer Herrick (413154)
Roger Wolff (3471188)
Martha Slattery (3471191)

December 2018

Approximate power contours for continuous data, such as miRNA, based on the (computationally expensi...

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Experiment 1 and normalized saccharin consumption rates in training of Experiment 2.

Andrew T. Marshall (689600)
Angela T. Liu (4248979)
Niall P. Murphy (3663400)
Nigel T. Maidment (375879)
Sean B. Ostlund (408731)

July 2017

Nonlinear mixed-effects model output for the analysis of normalized SCM consumption rates in Expe...

Linear mixed effect models.

Guillaume Deffuant (130910)
Thibaut Roubin (17935849)
Armelle Nugier (6204581)
Serge Guimond (6204587)

February 2024

The appendix explains how we computed linear mixed effect models for data structured in different le...

Additional file 3 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Abstract

Extracted data

Additional file 3 of Nonlinear mixed-effects modelling for single cell estimation: when, why, and how to use it

Abstract

Extracted data

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