Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Additional file 1: of FTO variant is not associated with osteoarthritis in the Chinese Han population: replication study for a genome-wide association study identified risk loci

Jin Dai (251612)
Pu Ying (5045693)
Dongquan Shi (438181)
Huacheng Hou (5045696)
Ye Sun (95796)
Zhihong Xu (266187)
Dongyang Chen (336023)
Guoqiang Zhang (131884)
Ming Ni (109558)
Huajian Teng (438182)
Yan Wang (15435)
Qing Jiang (197843)

April 2018

Table S1. Genotype and allele frequencies of FTO polymorphism (rs8044769) for association analysis o...

Additional file 1: of Integrating genome-wide DNA methylation and mRNA expression profiles identified different molecular features between Kashin-Beck disease and primary osteoarthritis

Yan Wen (416285)
Ping Li (31981)
Jingcan Hao (4920733)
Chen Duan (2827112)
Jing Han (43038)
Awen He (4277230)
Yanan Du (635727)
Li Liu (75607)
Xiao Liang (185891)
Feng Zhang (6548)
Xiong Guo (189516)

March 2018

Table S1. The common significant genes detected by both DNA methylation and mRNA expression profilin...

Annotating Transcriptional Effects of Genetic Variants in Disease-Relevant Tissue: Transcriptome-Wide Allelic Imbalance in Osteoarthritic Cartilage

Hollander, W. den
Pulyakhina, I.
Boer, C.
Bomer, N.
Breggen, R. van der
Arindrarto, W.
Almeida, R.
Lakenberg, N.
Sentner, T.
Laros, J.F.
Hoen, P.A.C. 't
Slagboom, E.P.
Nelissen, R.
Meurs, J. van
Ramos, Y.F.M.
Meulenbelt, I.

January 2019

OBJECTIVE: Multiple single-nucleotide polymorphisms (SNPs) conferring susceptibility to osteoarthrit...

Additional file 10: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Diagram to explain the premise of allelic expression imbalance analysis when there are no transcript...

Additional file 3: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

n numbers used for real-time reverse transcription PCR (qPCR) and allelic expression imbalance (AEI)

Additional file 4: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

The seven transcript SNPs and their pair-wise Dâ and r 2 values relative to rs9350591

Additional file 2: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Table of patient characteristics and their genotype at rs9350591 used in gene expression and allelic...

Additional file 1: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Details of the patients studied in this report for A) qPCR analysis and B) RNA sequencing analysis. ...

Additional file 6: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Bioinformatics database search of the SNPs in high LD with rs11842874. Detailed are the chromatin st...

Additional file 3: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Primers used for the cloning of the seven SNPs within the association interval for their analysis by...

Additional file 2: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

The 21 MCF2L protein coding transcript isoforms listed by Ensembl and analysed as part of Fig.Â 1 . ...

Additional file 5: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

An eQTL that regulates MCF2L gene expression in skeletal muscle and oesophagus muscularis. A search ...

Additional file 1: Table S1. of Variation at interleukin-6 receptor gene is associated to joint damage in rheumatoid arthritis

Maria Lopez-Lasanta (3584117)
Antonio Julià (258036)
Joan Maymó (717850)
Benjamín Fernández-Gutierrez (118677)
Inmaculada Ureña-Garnica (3584114)
Francisco Blanco (717849)
Juan Cañete (3458549)
Mercedes Alperi-López (511456)
Alex Olivè (3584129)
Héctor Corominas (716206)
Jesus Tornero (3584108)
Alba Erra (258037)
Miriam Almirall (3584105)
Nuria Palau (3584102)
Ana Ortiz (3584120)
Gabriela Avila (3584126)
Luis Rodriguez-Rodriguez (430986)
Arnald Alonso (429872)
Raül Tortosa (3584111)
Isidoro Gonzalez-Alvaro (3584123)
Sara Marsal (258049)

September 2015

Presenting the association of IL6R locus SNPs with joint damage in the discovery stage under alterna...

Additional file 1: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Table S1. Quality assessment of eligible studies (Newcastle-Ottawa Scale). Table S2. Definitions of ...

Microsatellite association mapping of a primary osteoarthritis susceptibility locus on chromosome 6p12.3-q13.

Southam, L
Dowling, B
Ferreira, A
Marcelline, L
Mustafa, Z
Chapman, K
Bentham, G
Carr, A
Loughlin, J

January 2004

OBJECTIVE: To test a high density of microsatellite markers from within a primary osteoarthritis (OA...

Additional file 1: of FTO variant is not associated with osteoarthritis in the Chinese Han population: replication study for a genome-wide association study identified risk loci

Jin Dai (251612)
Pu Ying (5045693)
Dongquan Shi (438181)
Huacheng Hou (5045696)
Ye Sun (95796)
Zhihong Xu (266187)
Dongyang Chen (336023)
Guoqiang Zhang (131884)
Ming Ni (109558)
Huajian Teng (438182)
Yan Wang (15435)
Qing Jiang (197843)

April 2018

Table S1. Genotype and allele frequencies of FTO polymorphism (rs8044769) for association analysis o...

Additional file 1: of Integrating genome-wide DNA methylation and mRNA expression profiles identified different molecular features between Kashin-Beck disease and primary osteoarthritis

Yan Wen (416285)
Ping Li (31981)
Jingcan Hao (4920733)
Chen Duan (2827112)
Jing Han (43038)
Awen He (4277230)
Yanan Du (635727)
Li Liu (75607)
Xiao Liang (185891)
Feng Zhang (6548)
Xiong Guo (189516)

March 2018

Table S1. The common significant genes detected by both DNA methylation and mRNA expression profilin...

Annotating Transcriptional Effects of Genetic Variants in Disease-Relevant Tissue: Transcriptome-Wide Allelic Imbalance in Osteoarthritic Cartilage

Hollander, W. den
Pulyakhina, I.
Boer, C.
Bomer, N.
Breggen, R. van der
Arindrarto, W.
Almeida, R.
Lakenberg, N.
Sentner, T.
Laros, J.F.
Hoen, P.A.C. 't
Slagboom, E.P.
Nelissen, R.
Meurs, J. van
Ramos, Y.F.M.
Meulenbelt, I.

January 2019

OBJECTIVE: Multiple single-nucleotide polymorphisms (SNPs) conferring susceptibility to osteoarthrit...

Additional file 10: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Diagram to explain the premise of allelic expression imbalance analysis when there are no transcript...

Additional file 3: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

n numbers used for real-time reverse transcription PCR (qPCR) and allelic expression imbalance (AEI)

Additional file 4: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

The seven transcript SNPs and their pair-wise Dâ and r 2 values relative to rs9350591

Additional file 2: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Table of patient characteristics and their genotype at rs9350591 used in gene expression and allelic...

Additional file 1: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Details of the patients studied in this report for A) qPCR analysis and B) RNA sequencing analysis. ...

Additional file 6: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Bioinformatics database search of the SNPs in high LD with rs11842874. Detailed are the chromatin st...

Additional file 3: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Primers used for the cloning of the seven SNPs within the association interval for their analysis by...

Additional file 2: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

The 21 MCF2L protein coding transcript isoforms listed by Ensembl and analysed as part of Fig.Â 1 . ...

Additional file 5: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

An eQTL that regulates MCF2L gene expression in skeletal muscle and oesophagus muscularis. A search ...

Additional file 1: Table S1. of Variation at interleukin-6 receptor gene is associated to joint damage in rheumatoid arthritis

Maria Lopez-Lasanta (3584117)
Antonio Julià (258036)
Joan Maymó (717850)
Benjamín Fernández-Gutierrez (118677)
Inmaculada Ureña-Garnica (3584114)
Francisco Blanco (717849)
Juan Cañete (3458549)
Mercedes Alperi-López (511456)
Alex Olivè (3584129)
Héctor Corominas (716206)
Jesus Tornero (3584108)
Alba Erra (258037)
Miriam Almirall (3584105)
Nuria Palau (3584102)
Ana Ortiz (3584120)
Gabriela Avila (3584126)
Luis Rodriguez-Rodriguez (430986)
Arnald Alonso (429872)
Raül Tortosa (3584111)
Isidoro Gonzalez-Alvaro (3584123)
Sara Marsal (258049)

September 2015

Presenting the association of IL6R locus SNPs with joint damage in the discovery stage under alterna...

Additional file 1: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Table S1. Quality assessment of eligible studies (Newcastle-Ottawa Scale). Table S2. Definitions of ...

Microsatellite association mapping of a primary osteoarthritis susceptibility locus on chromosome 6p12.3-q13.

Southam, L
Dowling, B
Ferreira, A
Marcelline, L
Mustafa, Z
Chapman, K
Bentham, G
Carr, A
Loughlin, J

January 2004

OBJECTIVE: To test a high density of microsatellite markers from within a primary osteoarthritis (OA...

Additional file 1: of FTO variant is not associated with osteoarthritis in the Chinese Han population: replication study for a genome-wide association study identified risk loci

Jin Dai (251612)
Pu Ying (5045693)
Dongquan Shi (438181)
Huacheng Hou (5045696)
Ye Sun (95796)
Zhihong Xu (266187)
Dongyang Chen (336023)
Guoqiang Zhang (131884)
Ming Ni (109558)
Huajian Teng (438182)
Yan Wang (15435)
Qing Jiang (197843)

April 2018

Table S1. Genotype and allele frequencies of FTO polymorphism (rs8044769) for association analysis o...

Additional file 1: of Integrating genome-wide DNA methylation and mRNA expression profiles identified different molecular features between Kashin-Beck disease and primary osteoarthritis

Yan Wen (416285)
Ping Li (31981)
Jingcan Hao (4920733)
Chen Duan (2827112)
Jing Han (43038)
Awen He (4277230)
Yanan Du (635727)
Li Liu (75607)
Xiao Liang (185891)
Feng Zhang (6548)
Xiong Guo (189516)

March 2018

Table S1. The common significant genes detected by both DNA methylation and mRNA expression profilin...

Annotating Transcriptional Effects of Genetic Variants in Disease-Relevant Tissue: Transcriptome-Wide Allelic Imbalance in Osteoarthritic Cartilage

Hollander, W. den
Pulyakhina, I.
Boer, C.
Bomer, N.
Breggen, R. van der
Arindrarto, W.
Almeida, R.
Lakenberg, N.
Sentner, T.
Laros, J.F.
Hoen, P.A.C. 't
Slagboom, E.P.
Nelissen, R.
Meurs, J. van
Ramos, Y.F.M.
Meulenbelt, I.

January 2019

OBJECTIVE: Multiple single-nucleotide polymorphisms (SNPs) conferring susceptibility to osteoarthrit...

Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Abstract

Extracted data

Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Abstract

Extracted data

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