<p>(A) The hierarchical clustering of expression patterns for the 155 increased genes of cellulose regulon in the mutants versus wild-type strain. Hierarchical clustering analysis was performed using software HCE3.5. Heat maps showing log (RPKM) from minimum (bright green) to maximum (red) revealed four gene sets. (B) SDS-PAGE of proteins from unconcentrated culture supernatants of wild-type strain and <i>clrB</i> or/and <i>creA</i> mutants when cultured on glucose for 22 hours then shifted to cellulose for 96 hours. (C) Venn diagram from analysis of secretomes of culture supernatants from <i>P</i>. <i>oxalicum</i> mutants. The loading samples were normalized to same concentration with buffer.</p
<p>(A) The heatmap for the genes at 19q13 are shown clustered by sample. The four samples on the lef...
(A) Heat map of categorized single-gene knockouts (heat flow fold change over wild-type; N = 370). S...
<p>The microarray data for 47,323 genes were filtered by applying two criteria for significance, <i>...
<p>(A) Protein concentration and cellulase activity in a Δ<i>vib-1</i> mutant versus a Δ<i>vib-1</i>...
<p>The set of mutants was screened on plates for hypersensitivity to four distinct stress conditions...
Additional file 12. Pairwise correlation heatmaps for each media tested at 24 °C. A), B), and C) rep...
(A) Volcano plot of differentially expressed genes (DEGs). DEGs were selected with thresholds of |lo...
<p>The heat map rows represent centered and scaled ortholog copy numbers found in the strains. The d...
<p>(A) Hierarchical clustering of the gene expression profiles of 90 cultures grown in minimal mediu...
<p><i>A. sarcoides</i> transcription was profiled when grown on potato-dextrose media for 4 days (PD...
<p>All the experimental groups, including the corresponding controls (PBS 8 h and PBS – MEM 8 h), we...
(A) Schematic diagram of cellulose synthesis pathway; (B, C) heat maps show gene expression changes ...
<p>SCB34 and RS218 are highlighted by the arrows, among 33 additional representative <i>E</i>. <i>co...
<p>Hierarchical clustering of gene expression profiles in all samples. Each row represents a gene an...
All strains were grown for approximatley 30 hours in 15°C and 20°C (E. coli and S. cerevisiae, respe...
<p>(A) The heatmap for the genes at 19q13 are shown clustered by sample. The four samples on the lef...
(A) Heat map of categorized single-gene knockouts (heat flow fold change over wild-type; N = 370). S...
<p>The microarray data for 47,323 genes were filtered by applying two criteria for significance, <i>...
<p>(A) Protein concentration and cellulase activity in a Δ<i>vib-1</i> mutant versus a Δ<i>vib-1</i>...
<p>The set of mutants was screened on plates for hypersensitivity to four distinct stress conditions...
Additional file 12. Pairwise correlation heatmaps for each media tested at 24 °C. A), B), and C) rep...
(A) Volcano plot of differentially expressed genes (DEGs). DEGs were selected with thresholds of |lo...
<p>The heat map rows represent centered and scaled ortholog copy numbers found in the strains. The d...
<p>(A) Hierarchical clustering of the gene expression profiles of 90 cultures grown in minimal mediu...
<p><i>A. sarcoides</i> transcription was profiled when grown on potato-dextrose media for 4 days (PD...
<p>All the experimental groups, including the corresponding controls (PBS 8 h and PBS – MEM 8 h), we...
(A) Schematic diagram of cellulose synthesis pathway; (B, C) heat maps show gene expression changes ...
<p>SCB34 and RS218 are highlighted by the arrows, among 33 additional representative <i>E</i>. <i>co...
<p>Hierarchical clustering of gene expression profiles in all samples. Each row represents a gene an...
All strains were grown for approximatley 30 hours in 15°C and 20°C (E. coli and S. cerevisiae, respe...
<p>(A) The heatmap for the genes at 19q13 are shown clustered by sample. The four samples on the lef...
(A) Heat map of categorized single-gene knockouts (heat flow fold change over wild-type; N = 370). S...
<p>The microarray data for 47,323 genes were filtered by applying two criteria for significance, <i>...