Additional file 1: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Additional file 1: of Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi (736233)
Amandine Cian (653810)
Céline Nourrisson (653807)
Bruno Pereira (415597)
Christelle Morelle (3446330)
Patrick Bastien (68928)
Anne-Pauline Bellanger (3446333)
Françoise Botterel (43200)
Ermanno Candolfi (179298)
Guillaume Desoubeaux (3446336)
Laurence Lachaud (2636371)
Florent Morio (217685)
Christelle Pomares (312204)
Meja Rabodonirina (542035)
Ivan Wawrzyniak (329392)
Frédéric Delbac (329394)
Nausicaa Gantois (480716)
Gabriela Certad (111449)
Laurence Delhaes (153955)
Philippe Poirier (329391)
Eric Viscogliosi (111438)

August 2016

Isolation source (center), season of collect, ST identification and GenBank accession number of Blas...

Additional file 1: Table S1. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

Piklu Roy Chowdhury (479454)
Matthew DeMaere (3540893)
Toni Chapman (3540890)
Paul Worden (3540887)
Ian Charles (3540896)
Aaron Darling (61404)
Steven Djordjevic (3540884)

March 2016

Isolation history, genomic assembly and initial PCR screening results of the five isolates analysed ...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 2: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

Pulse field analysis of the new assemblage A-II isolates. Pulse field analyses of the smallest chrom...

Additional file 5: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

HCMP variability. Variability of HCMP genes in the different assemblage A isolates, WB, AS98 and AS1...

Additional file 6: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

Nucleotide diversity between assemblage A orthologs. List of assemblage AI and AII orthologs and the...

Additional file 1: of Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England

Corrado Minetti (3407120)
Kenneth Lamden (3407123)
Caroline Durband (3407126)
John Cheesbrough (270580)
Andrew Fox (270589)
Jonathan Wastling (555304)

September 2015

Reference sequences used for Giardia sub-assemblage identification. Sequences are indicated by their...

Additional file 1: of Molecular epidemiology of Giardia duodenalis infection in humans in Southern Ethiopia: a triosephosphate isomerase gene-targeted analysis

Mengistu Damitie (4910158)
Zeleke Mekonnen (226283)
Tadesse Getahun (4910164)
Dante Santiago (4910161)
Luc Leyns (79236)

March 2018

Multiligual abstract in the six official working languages of the United Nations. (PDF 740 kb

Additional file 2: of Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England

Corrado Minetti (3407120)
Kenneth Lamden (3407123)
Caroline Durband (3407126)
John Cheesbrough (270580)
Andrew Fox (270589)
Jonathan Wastling (555304)

September 2015

Maximum likelihood trees of 131 bg (A), 118 gdh (B) and 136 tpi (C) sequences. The trees are based o...

Additional file 1: of A new species of Giardia KĂźnstler, 1882 (Sarcomastigophora: Hexamitidae) in hamsters

Zhangxia Lyu (4987589)
Jingru Shao (1943764)
Min Xue (107445)
Qingqing Ye (2085655)
Bing Chen (32669)
Yan Qin (118276)
Jianfan Wen (4987586)

March 2018

The primer pairs designed for amplification of SSU rRNA, Î˛-giardian and elongation factor-1 alpha. ...

Additional file 2: of A new species of Giardia KĂźnstler, 1882 (Sarcomastigophora: Hexamitidae) in hamsters

Zhangxia Lyu (4987589)
Jingru Shao (1943764)
Min Xue (107445)
Qingqing Ye (2085655)
Bing Chen (32669)
Yan Qin (118276)
Jianfan Wen (4987586)

March 2018

Table S1. The SSU rRNA, Î˛-giardian and elongation factor-1 alpha sequences retrieved from GenBank a...

Draft Genome Sequencing of Giardia intestinalis Assemblage B Isolate GS: Is Human Giardiasis Caused by Two Different Species?

Elsie Castro
Ellen Sherwood
Johan Ankarklev
David S
Daniel Palm
Jan O. Andersson
Staffan G. Svärd

January 2009

Giardia intestinalis is a major cause of diarrheal disease worldwide and two major Giardia genotypes...

Inter and Intra-Assemblage Characterizations of Giardia intestinalis: from clinic to genome

Ankarklev, Johan

January 2012

The protozoan parasite Giardia intestinalis (syn. G. lamblia, G. duodenalis) is one of the most comm...

Additional file 1: of Genome analysis of E. coli isolated from Crohnâs disease patients

Daria Rakitina (104963)
Alexander Manolov (4259773)
Alexandra Kanygina (3455015)
Sofya Garushyants (4259776)
Julia Baikova (4259746)
Dmitry Alexeev (1535380)
Valentina Ladygina (2131024)
Elena Kostryukova (3455012)
Andrei Larin (4259758)
Tatiana Semashko (3547331)
Irina Karpova (3606446)
Vladislav Babenko (4259743)
Ruzilya Ismagilova (4259761)
Sergei Malanin (4259740)
Mikhail Gelfand (4027)
Elena Ilina (741179)
Roman Gorodnichev (4259749)
Eugenia Lisitsyna (4259770)
Gennady Aleshkin (4259782)
Petr Scherbakov (4259764)
Igor Khalif (4259752)
Marina Shapina (4259755)
Igor Maev (4259779)
Dmitry Andreev (4259767)
Vadim Govorun (2131033)

July 2017

Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: of Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi (736233)
Amandine Cian (653810)
Céline Nourrisson (653807)
Bruno Pereira (415597)
Christelle Morelle (3446330)
Patrick Bastien (68928)
Anne-Pauline Bellanger (3446333)
Françoise Botterel (43200)
Ermanno Candolfi (179298)
Guillaume Desoubeaux (3446336)
Laurence Lachaud (2636371)
Florent Morio (217685)
Christelle Pomares (312204)
Meja Rabodonirina (542035)
Ivan Wawrzyniak (329392)
Frédéric Delbac (329394)
Nausicaa Gantois (480716)
Gabriela Certad (111449)
Laurence Delhaes (153955)
Philippe Poirier (329391)
Eric Viscogliosi (111438)

August 2016

Isolation source (center), season of collect, ST identification and GenBank accession number of Blas...

Additional file 1: Table S1. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

Piklu Roy Chowdhury (479454)
Matthew DeMaere (3540893)
Toni Chapman (3540890)
Paul Worden (3540887)
Ian Charles (3540896)
Aaron Darling (61404)
Steven Djordjevic (3540884)

March 2016

Isolation history, genomic assembly and initial PCR screening results of the five isolates analysed ...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 2: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

Pulse field analysis of the new assemblage A-II isolates. Pulse field analyses of the smallest chrom...

Additional file 5: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

HCMP variability. Variability of HCMP genes in the different assemblage A isolates, WB, AS98 and AS1...

Additional file 6: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Johan Ankarklev (139024)
Oscar Franzén (172092)
Dimitra Peirasmaki (3582905)
Jon Jerlström-Hultqvist (260683)
Marianne Lebbad (139030)
Jan Andersson (218600)
Björn Andersson (2663065)
Staffan Svärd (3582902)

September 2015

Nucleotide diversity between assemblage A orthologs. List of assemblage AI and AII orthologs and the...

Additional file 1: of Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England

Corrado Minetti (3407120)
Kenneth Lamden (3407123)
Caroline Durband (3407126)
John Cheesbrough (270580)
Andrew Fox (270589)
Jonathan Wastling (555304)

September 2015

Reference sequences used for Giardia sub-assemblage identification. Sequences are indicated by their...

Additional file 1: of Molecular epidemiology of Giardia duodenalis infection in humans in Southern Ethiopia: a triosephosphate isomerase gene-targeted analysis

Mengistu Damitie (4910158)
Zeleke Mekonnen (226283)
Tadesse Getahun (4910164)
Dante Santiago (4910161)
Luc Leyns (79236)

March 2018

Multiligual abstract in the six official working languages of the United Nations. (PDF 740 kb

Additional file 2: of Determination of Giardia duodenalis assemblages and multi-locus genotypes in patients with sporadic giardiasis from England

Corrado Minetti (3407120)
Kenneth Lamden (3407123)
Caroline Durband (3407126)
John Cheesbrough (270580)
Andrew Fox (270589)
Jonathan Wastling (555304)

September 2015

Maximum likelihood trees of 131 bg (A), 118 gdh (B) and 136 tpi (C) sequences. The trees are based o...

Additional file 1: of A new species of Giardia KĂźnstler, 1882 (Sarcomastigophora: Hexamitidae) in hamsters

Zhangxia Lyu (4987589)
Jingru Shao (1943764)
Min Xue (107445)
Qingqing Ye (2085655)
Bing Chen (32669)
Yan Qin (118276)
Jianfan Wen (4987586)

March 2018

The primer pairs designed for amplification of SSU rRNA, Î˛-giardian and elongation factor-1 alpha. ...

Additional file 2: of A new species of Giardia KĂźnstler, 1882 (Sarcomastigophora: Hexamitidae) in hamsters

Zhangxia Lyu (4987589)
Jingru Shao (1943764)
Min Xue (107445)
Qingqing Ye (2085655)
Bing Chen (32669)
Yan Qin (118276)
Jianfan Wen (4987586)

March 2018

Table S1. The SSU rRNA, Î˛-giardian and elongation factor-1 alpha sequences retrieved from GenBank a...

Draft Genome Sequencing of Giardia intestinalis Assemblage B Isolate GS: Is Human Giardiasis Caused by Two Different Species?

Elsie Castro
Ellen Sherwood
Johan Ankarklev
David S
Daniel Palm
Jan O. Andersson
Staffan G. Svärd

January 2009

Giardia intestinalis is a major cause of diarrheal disease worldwide and two major Giardia genotypes...

Inter and Intra-Assemblage Characterizations of Giardia intestinalis: from clinic to genome

Ankarklev, Johan

January 2012

The protozoan parasite Giardia intestinalis (syn. G. lamblia, G. duodenalis) is one of the most comm...

Additional file 1: of Genome analysis of E. coli isolated from Crohnâs disease patients

Daria Rakitina (104963)
Alexander Manolov (4259773)
Alexandra Kanygina (3455015)
Sofya Garushyants (4259776)
Julia Baikova (4259746)
Dmitry Alexeev (1535380)
Valentina Ladygina (2131024)
Elena Kostryukova (3455012)
Andrei Larin (4259758)
Tatiana Semashko (3547331)
Irina Karpova (3606446)
Vladislav Babenko (4259743)
Ruzilya Ismagilova (4259761)
Sergei Malanin (4259740)
Mikhail Gelfand (4027)
Elena Ilina (741179)
Roman Gorodnichev (4259749)
Eugenia Lisitsyna (4259770)
Gennady Aleshkin (4259782)
Petr Scherbakov (4259764)
Igor Khalif (4259752)
Marina Shapina (4259755)
Igor Maev (4259779)
Dmitry Andreev (4259767)
Vadim Govorun (2131033)

July 2017

Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: of Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi (736233)
Amandine Cian (653810)
Céline Nourrisson (653807)
Bruno Pereira (415597)
Christelle Morelle (3446330)
Patrick Bastien (68928)
Anne-Pauline Bellanger (3446333)
Françoise Botterel (43200)
Ermanno Candolfi (179298)
Guillaume Desoubeaux (3446336)
Laurence Lachaud (2636371)
Florent Morio (217685)
Christelle Pomares (312204)
Meja Rabodonirina (542035)
Ivan Wawrzyniak (329392)
Frédéric Delbac (329394)
Nausicaa Gantois (480716)
Gabriela Certad (111449)
Laurence Delhaes (153955)
Philippe Poirier (329391)
Eric Viscogliosi (111438)

August 2016

Isolation source (center), season of collect, ST identification and GenBank accession number of Blas...

Additional file 1: Table S1. of Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

Piklu Roy Chowdhury (479454)
Matthew DeMaere (3540893)
Toni Chapman (3540890)
Paul Worden (3540887)
Ian Charles (3540896)
Aaron Darling (61404)
Steven Djordjevic (3540884)

March 2016

Isolation history, genomic assembly and initial PCR screening results of the five isolates analysed ...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 1: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Abstract

Extracted data

Additional file 1: of Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates

Abstract

Extracted data

Related items

Related items