Additional file 3: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 8: Table S5. of Shotgun proteomics of the barley seed proteome

Ramamurthy Mahalingam (1598)

January 2017

List of the barley seed proteins with descriptions derived from Uniprot, unique peptide count, spect...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 1: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Mengjun Huang (3549827)
Yang Fang (566232)
Yang Liu (4829)
Yanling Jin (3549833)
Jiaolong Sun (3549830)
Xiang Tao (168254)
Xinrong Ma (4179)
Kaize He (3549836)
Hai Zhao (730325)

September 2015

Up-regulated proteins after application of uniconazole. The up-regulated proteins with >1.2-fold cha...

Additional file 2: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Mengjun Huang (3549827)
Yang Fang (566232)
Yang Liu (4829)
Yanling Jin (3549833)
Jiaolong Sun (3549830)
Xiang Tao (168254)
Xinrong Ma (4179)
Kaize He (3549836)
Hai Zhao (730325)

September 2015

Down-regulated proteins after application of uniconazole. The down-regulated proteins with <0.8-fold...

RESEARCH ARTICLE Open Access Using

Xinrong Ma
Kaize He
Hai Zhao

August 2016

proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation...

Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Huang, Mengjun
Fang, Yang
Liu, Yang
Jin, Yanling
Sun, Jiaolong
Tao, Xiang
Ma, Xinrong
He, Kaize
Zhao, Hai
Zhao, H (reprint author), Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Peoples R China.

January 2015

Background: Duckweed (Landoltia punctata) has the potential to remediate wastewater and accumulate e...

RESEARCH ARTICLE Open Access

Equal Contributors
Guohua Zhang
Kaize He
Yun Zhao
Hai Zhao

August 2016

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) I: trans...

Additional file 3: of Heterogeneous network propagation for herb target identification

Kuo Yang (280921)
Guangming Liu (508069)
Ning Wang (108353)
Runshun Zhang (4996820)
Jian Yu (141239)
Jianxin Chen (161391)
Xuezhong Zhou (413168)

March 2018

â KEGG_protein_pathway.xls. 16,162 protein-pathway associations between 4794 proteins and 244 path...

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) II: transcriptome alterations of pathways involved in carbohydrate metabolism and endogenous hormone crosstalk

Liu, Yang
Fang, Yang
Huang, Mengjun
Jin, Yanling
Sun, Jiaolong
Tao, Xiang
Zhang, Guohua
He, Kaize
Zhao, Yun
Zhao, Hai
Zhao, H (reprint author), Chinese Acad Sci, Chengdu Inst Biol, 9 Sect 4,Renmin Nan Rd, Chengdu 610041, Peoples R China.

January 2015

Background: Landoltia punctata is a widely distributed duckweed species with great potential to accu...

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 4: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S2. Classification of the identified proteins by KEGG database, and the thirteen most signifi...

Additional file 8: of Comparative proteomic analysis of multi-ovary wheat under heterogeneous cytoplasm suppression

Jialin Guo (710399)
Gaisheng Zhang (117081)
Yulong Song (129600)
Zheng Li (26302)
Shoucai Ma (710400)
Na Niu (103896)
Junwei Wang (239285)

May 2019

Figure S4. Histogram of differentially expressed proteins (DEPs) involved in the significantly enric...

Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

Sana Khan (3626855)
Swati Upadhyay (3626858)
Feroz Khan (462714)
Sudeep Tandon (653852)
Rakesh Shukla (709813)
Sumit Ghosh (464456)
Vikrant Gupta (398109)
Suchitra Banerjee (3626852)
Laiq ur Rahman (1383300)

January 2017

List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT...

Additional file 7: of Comparative proteomic analysis of multi-ovary wheat under heterogeneous cytoplasm suppression

Jialin Guo (710399)
Gaisheng Zhang (117081)
Yulong Song (129600)
Zheng Li (26302)
Shoucai Ma (710400)
Na Niu (103896)
Junwei Wang (239285)

May 2019

Table S4. Significantly enriched KEGG pathways of differentially expressed proteins. (XLSX 12 kb

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 8: Table S5. of Shotgun proteomics of the barley seed proteome

Ramamurthy Mahalingam (1598)

January 2017

List of the barley seed proteins with descriptions derived from Uniprot, unique peptide count, spect...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 1: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Mengjun Huang (3549827)
Yang Fang (566232)
Yang Liu (4829)
Yanling Jin (3549833)
Jiaolong Sun (3549830)
Xiang Tao (168254)
Xinrong Ma (4179)
Kaize He (3549836)
Hai Zhao (730325)

September 2015

Up-regulated proteins after application of uniconazole. The up-regulated proteins with >1.2-fold cha...

Additional file 2: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Mengjun Huang (3549827)
Yang Fang (566232)
Yang Liu (4829)
Yanling Jin (3549833)
Jiaolong Sun (3549830)
Xiang Tao (168254)
Xinrong Ma (4179)
Kaize He (3549836)
Hai Zhao (730325)

September 2015

Down-regulated proteins after application of uniconazole. The down-regulated proteins with <0.8-fold...

RESEARCH ARTICLE Open Access Using

Xinrong Ma
Kaize He
Hai Zhao

August 2016

proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation...

Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Huang, Mengjun
Fang, Yang
Liu, Yang
Jin, Yanling
Sun, Jiaolong
Tao, Xiang
Ma, Xinrong
He, Kaize
Zhao, Hai
Zhao, H (reprint author), Chinese Acad Sci, Chengdu Inst Biol, Chengdu 610041, Peoples R China.

January 2015

Background: Duckweed (Landoltia punctata) has the potential to remediate wastewater and accumulate e...

RESEARCH ARTICLE Open Access

Equal Contributors
Guohua Zhang
Kaize He
Yun Zhao
Hai Zhao

August 2016

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) I: trans...

Additional file 3: of Heterogeneous network propagation for herb target identification

Kuo Yang (280921)
Guangming Liu (508069)
Ning Wang (108353)
Runshun Zhang (4996820)
Jian Yu (141239)
Jianxin Chen (161391)
Xuezhong Zhou (413168)

March 2018

â KEGG_protein_pathway.xls. 16,162 protein-pathway associations between 4794 proteins and 244 path...

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) II: transcriptome alterations of pathways involved in carbohydrate metabolism and endogenous hormone crosstalk

Liu, Yang
Fang, Yang
Huang, Mengjun
Jin, Yanling
Sun, Jiaolong
Tao, Xiang
Zhang, Guohua
He, Kaize
Zhao, Yun
Zhao, Hai
Zhao, H (reprint author), Chinese Acad Sci, Chengdu Inst Biol, 9 Sect 4,Renmin Nan Rd, Chengdu 610041, Peoples R China.

January 2015

Background: Landoltia punctata is a widely distributed duckweed species with great potential to accu...

Additional file 1: of Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

Orawan Borirak (3473786)
Leo Koning (3473792)
Aniek Woude (3473795)
Huub Hoefsloot (2573806)
Henk Dekker (3473798)
Winfried Roseboom (1392628)
Chris Koster (3473789)
Klaas Hellingwerf (3469118)

August 2015

Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...

Additional file 4: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S2. Classification of the identified proteins by KEGG database, and the thirteen most signifi...

Additional file 8: of Comparative proteomic analysis of multi-ovary wheat under heterogeneous cytoplasm suppression

Jialin Guo (710399)
Gaisheng Zhang (117081)
Yulong Song (129600)
Zheng Li (26302)
Shoucai Ma (710400)
Na Niu (103896)
Junwei Wang (239285)

May 2019

Figure S4. Histogram of differentially expressed proteins (DEPs) involved in the significantly enric...

Additional file 5: of Comparative transcriptome analysis reveals candidate genes for the biosynthesis of natural insecticide in Tanacetum cinerariifolium

Sana Khan (3626855)
Swati Upadhyay (3626858)
Feroz Khan (462714)
Sudeep Tandon (653852)
Rakesh Shukla (709813)
Sumit Ghosh (464456)
Vikrant Gupta (398109)
Suchitra Banerjee (3626852)
Laiq ur Rahman (1383300)

January 2017

List of tissue specific unigenes assigned to KEGG pathway with their KEGG IDs and Annotation for PYT...

Additional file 7: of Comparative proteomic analysis of multi-ovary wheat under heterogeneous cytoplasm suppression

Jialin Guo (710399)
Gaisheng Zhang (117081)
Yulong Song (129600)
Zheng Li (26302)
Shoucai Ma (710400)
Na Niu (103896)
Junwei Wang (239285)

May 2019

Table S4. Significantly enriched KEGG pathways of differentially expressed proteins. (XLSX 12 kb

Additional file 4: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Enriched KEGG pathway analysis of significantly differentially expressed genes between borneol- and ...

Additional file 8: Table S5. of Shotgun proteomics of the barley seed proteome

Ramamurthy Mahalingam (1598)

January 2017

List of the barley seed proteins with descriptions derived from Uniprot, unique peptide count, spect...

Additional file 5: Table S3. of Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Chi-Chu Tsai (668824)
Keh-Ming Wu (174958)
Tzen-Yuh Chiang (138945)
Chun-Yen Huang (3548543)
Chang-Hung Chou (504877)
Shu-Ju Li (3548540)
Yu-Chung Chiang (114878)

March 2016

Mapping of KEGG biological pathways for up-regulated (log2-FC ≥ 1, q-value < 0. 05, TMM-normalized F...

Additional file 3: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Abstract

Extracted data

Additional file 3: of Using proteomic analysis to investigate uniconazole-induced phytohormone variation and starch accumulation in duckweed (Landoltia punctata)

Abstract

Extracted data

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