Additional file 4: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Variation in faecal microbiota in a group of horses managed at pasture over a 12-month period

Shebl Salem (3688759)

June 2018

The study aimed at investigating temporal stability of faecal microbiota in horses managed non-inten...

Additional file 1: of Quantification of Clostridioides (Clostridium) difficile in feces of calves of different age and determination of predominant Clostridioides difficile ribotype 033 relatedness and transmission between family dairy farms using multilocus variable-number tandem-repeat analysis

Petra Bandelj (5808947)
CĂŠline Harmanus (5808956)
Rok Blagus (3425273)
Marko Cotman (5808950)
Ed Kuijper (4927945)
Matjaz Ocepek (5808953)
Modest Vengust (5264075)

October 2018

Quantification results for C. difficile in feces of calves with single positive sample (0â21Â days...

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

Marcio C. Costa
Luis G. Arroyo
Emma Allen-vercoe
Henry R. Stämpfli
Peter T. Kim
Amy Sturgeon
J. Scott Weese

August 2016

The intestinal tract houses one of the richest and most complex microbial populations on the planet,...

Additional file 1: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Quality analysis of the metagenetic libraries created for the horse faecal samples analysed. (DOCX 3...

Additional file 6: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Microbiota faecal composition at species level (cumulative mean relative abundance >4 %) of C. diffi...

Additional file 3: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Principal coordinate analysis of the diarrhoeic and non-diarrhoeic horses. The 3 graphs show the sam...

Additional file 5: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Detailed information on five C. difficile negative horses studied via high-throughput amplicon seque...

Additional file 7: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Principal coordinate analysis of C. difficile positive and negative horses. The 3 graphs show the sa...

Additional file 8: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Bacterial genus whose relative abundance was statistically different between C. difficile positive a...

Additional file 10: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Abundance of the dominant genera found in the enteritis and enterocolitis samples. The graph shows t...

Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission.

Rodriguez, Cristina
Taminiau, Bernard
Brévers, Bastien
Avesani, Véronique
Van Broeck, Johan
Leroux, Aurélia
Gallot, Marjorie
Bruwier, Antoine
Amory, Helène
Delmée, Michel
Daube, Georges

January 2015

Background: The equine faecal microbiota is very complex and remains largely unknown, while interspe...

Carriage and acquisition rates of Clostridium difficile in hospitalized horses, including molecular characterization, multilocus sequence typing and antimicrobial susceptibility of bacterial isolates

Rodriguez, C.
Taminiau, B.
Brévers, B.
Avesani, Véronique
Van Broeck, Johan
Leroux, A.A.
Amory, H.
Delmée, Michel
Daube, G.

January 2014

Clostridium difficile has been identified as a significant agent of diarrhoea and enterocolitis in b...

Species-Level Gut Microbiota Analysis after Antibiotic-Induced Dysbiosis in Horses

Rebecca Di Pietro
Luis G. Arroyo
Mathilde Leclere
Marcio Carvalho Costa

September 2021

All current studies have used Illumina short-read sequencing to characterize the equine intestinal m...

Prevalence of Clostridium difficile and Clostridium perfringens in Swiss horses with and without gastrointestinal disease and microbiota composition in relation to Clostridium difficile shedding

Schoster, Angelika
Kunz, T
Lauper, M
Graubner, C
Schmitt, S
Weese, J S

September 2019

Overgrowth of enteric clostridia in dysbiosis in horses with colic is presumed but scarcely investig...

Longitudinal study of Clostridium difficile and antimicrobial susceptibility of Escherichia coli in healthy horses in a community setting

Schoster, Angelika
Staempfli, Henry Rolf
Arroyo, Luis Guillermo
Reid-Smith, R J
Janecko, N
Shewen, P E
Weese, Jeffrey Scott

January 2012

Point prevalence studies have reported carriage rates of enteric pathogens in healthy horses, but lo...

Variation in faecal microbiota in a group of horses managed at pasture over a 12-month period

Shebl Salem (3688759)

June 2018

The study aimed at investigating temporal stability of faecal microbiota in horses managed non-inten...

Additional file 1: of Quantification of Clostridioides (Clostridium) difficile in feces of calves of different age and determination of predominant Clostridioides difficile ribotype 033 relatedness and transmission between family dairy farms using multilocus variable-number tandem-repeat analysis

Petra Bandelj (5808947)
CĂŠline Harmanus (5808956)
Rok Blagus (3425273)
Marko Cotman (5808950)
Ed Kuijper (4927945)
Matjaz Ocepek (5808953)
Modest Vengust (5264075)

October 2018

Quantification results for C. difficile in feces of calves with single positive sample (0â21Â days...

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

Marcio C. Costa
Luis G. Arroyo
Emma Allen-vercoe
Henry R. Stämpfli
Peter T. Kim
Amy Sturgeon
J. Scott Weese

August 2016

The intestinal tract houses one of the richest and most complex microbial populations on the planet,...

Additional file 1: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Quality analysis of the metagenetic libraries created for the horse faecal samples analysed. (DOCX 3...

Additional file 6: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Microbiota faecal composition at species level (cumulative mean relative abundance >4 %) of C. diffi...

Additional file 3: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Principal coordinate analysis of the diarrhoeic and non-diarrhoeic horses. The 3 graphs show the sam...

Additional file 5: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Detailed information on five C. difficile negative horses studied via high-throughput amplicon seque...

Additional file 7: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Principal coordinate analysis of C. difficile positive and negative horses. The 3 graphs show the sa...

Additional file 8: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Bacterial genus whose relative abundance was statistically different between C. difficile positive a...

Additional file 10: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Cristina Rodriguez (464775)
Bernard Taminiau (758694)
Bastien Brévers (3571436)
Véronique Avesani (3457022)
Johan Van Broeck (3457025)
Aurélia Leroux (3571433)
Marjorie Gallot (3571427)
Antoine Bruwier (3571430)
Hélene Amory (3571424)
Michel Delmée (3168057)
Georges Daube (758698)

September 2015

Abundance of the dominant genera found in the enteritis and enterocolitis samples. The graph shows t...

Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission.

Rodriguez, Cristina
Taminiau, Bernard
Brévers, Bastien
Avesani, Véronique
Van Broeck, Johan
Leroux, Aurélia
Gallot, Marjorie
Bruwier, Antoine
Amory, Helène
Delmée, Michel
Daube, Georges

January 2015

Background: The equine faecal microbiota is very complex and remains largely unknown, while interspe...

Carriage and acquisition rates of Clostridium difficile in hospitalized horses, including molecular characterization, multilocus sequence typing and antimicrobial susceptibility of bacterial isolates

Rodriguez, C.
Taminiau, B.
Brévers, B.
Avesani, Véronique
Van Broeck, Johan
Leroux, A.A.
Amory, H.
Delmée, Michel
Daube, G.

January 2014

Clostridium difficile has been identified as a significant agent of diarrhoea and enterocolitis in b...

Species-Level Gut Microbiota Analysis after Antibiotic-Induced Dysbiosis in Horses

Rebecca Di Pietro
Luis G. Arroyo
Mathilde Leclere
Marcio Carvalho Costa

September 2021

All current studies have used Illumina short-read sequencing to characterize the equine intestinal m...

Prevalence of Clostridium difficile and Clostridium perfringens in Swiss horses with and without gastrointestinal disease and microbiota composition in relation to Clostridium difficile shedding

Schoster, Angelika
Kunz, T
Lauper, M
Graubner, C
Schmitt, S
Weese, J S

September 2019

Overgrowth of enteric clostridia in dysbiosis in horses with colic is presumed but scarcely investig...

Longitudinal study of Clostridium difficile and antimicrobial susceptibility of Escherichia coli in healthy horses in a community setting

Schoster, Angelika
Staempfli, Henry Rolf
Arroyo, Luis Guillermo
Reid-Smith, R J
Janecko, N
Shewen, P E
Weese, Jeffrey Scott

January 2012

Point prevalence studies have reported carriage rates of enteric pathogens in healthy horses, but lo...

Variation in faecal microbiota in a group of horses managed at pasture over a 12-month period

Shebl Salem (3688759)

June 2018

The study aimed at investigating temporal stability of faecal microbiota in horses managed non-inten...

Additional file 1: of Quantification of Clostridioides (Clostridium) difficile in feces of calves of different age and determination of predominant Clostridioides difficile ribotype 033 relatedness and transmission between family dairy farms using multilocus variable-number tandem-repeat analysis

Petra Bandelj (5808947)
CĂŠline Harmanus (5808956)
Rok Blagus (3425273)
Marko Cotman (5808950)
Ed Kuijper (4927945)
Matjaz Ocepek (5808953)
Modest Vengust (5264075)

October 2018

Quantification results for C. difficile in feces of calves with single positive sample (0â21Â days...

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

Marcio C. Costa
Luis G. Arroyo
Emma Allen-vercoe
Henry R. Stämpfli
Peter T. Kim
Amy Sturgeon
J. Scott Weese

August 2016

The intestinal tract houses one of the richest and most complex microbial populations on the planet,...

Additional file 4: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Abstract

Extracted data

Additional file 4: of Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

Abstract

Extracted data

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