Number of unique peptides, source proteins and genes eluted per cell line (before and after MV infection combined).

Decrease in host peptides after MV infection.

Ingrid M. M. Schellens (377152)
Ilka Hoof (58673)
Hugo D. Meiring (796644)
Sanne N. M. Spijkers (796645)
Martien C. M. Poelen (358390)
Jacqueline A. M. van Gaans-van den Brink (508737)
Kees van der Poel (796646)
Ana I. Costa (796647)
Cecile A. C. M. van Els (2206870)
Debbie van Baarle (164622)
Can Kesmir (2206873)

September 2015

(A) The number of unique peptides is plotted per infection state. Each line represents one HLA mo...

The number of differentially expressed genes between different pairs samples.

Zhansheng Li (537088)
Yumei Liu (286628)
Lingyun Li (142918)
Zhiyuan Fang (537089)
Limei Yang (223781)
Mu Zhuang (537090)
Yangyong Zhang (537091)
Honghao Lv (800307)

March 2019

The number of differentially expressed genes between different pairs samples.</p

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.

Liang Guo (95092)
Jennifer A. Smith (92064)
Michelle Abelson (5798132)
Irina Vlasova-St. Louis (5798135)
Leslie A. Schiff (5798138)
Paul R. Bohjanen (234753)

September 2018

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.</...

The number of proteins and peptides (in parentheses) identified for each virulence factor.

Armand Paauw (255206)
Holger C. Scholz (9118844)
Roos H. Mars-Groenendijk (3087930)
Lennard J. M. Dekker (8041340)
Theo M. Luider (242944)
Hans C. van Leeuwen (2734018)

January 2023

The number of proteins and peptides (in parentheses) identified for each virulence factor.</p

Number of common differentially expressed genes between different time points post-inoculation.

Chengxiang Hou (533401)
Guangxing Qin (429317)
Ting Liu (45625)
Tao Geng (32392)
Kun Gao (161056)
Zhonghua Pan (533402)
Heying Qian (533403)
Xijie Guo (429318)

March 2014

Number of common differentially expressed genes between different time points post-inoculation.</...

Number of upregulated genes in individual cell lines and top five of GO Biological Processes for each gene set.

Brita Singers Sørensen (783581)
Morten Busk (783582)
Jens Overgaard (48654)
Michael R. Horsman (642000)
Jan Alsner (48651)

August 2015

Number of upregulated genes in individual cell lines and top five of GO Biological Processes for ...

Number of proteins, peptides, and spectra identified by LC-MS/MS in cellular (MOI = 0.1 and 1) or PEG-enriched viral fractions (MOI = 1) at each time point of infection.

Jacque C. Young (161065)
Brian D. Dill (161071)
Chongle Pan (117744)
Robert L. Hettich (117757)
Jillian F. Banfield (161078)
Manesh Shah (117747)
Christophe Fremaux (161090)
Philippe Horvath (112559)
Rodolphe Barrangou (134837)
Nathan C. VerBerkmoes (2118220)

May 2012

Proteins, peptides, and spectral values are based on non-redundant identifications.All num...

Total number of proteins identified at 99% protein probability and total spectra at 95% peptide probability, with 2 minimum peptides.

Sowmyalakshmi Subramanian (3080607)
Emily Ricci (3080610)
Alfred Souleimanov (3080604)
Donald L. Smith (184414)

August 2016

Total number of proteins identified at 99% protein probability and total spectra at 95% peptide p...

Number of uniquely identified and overlapping proteins per species in two biofilm groups.

Kai Bao (700307)
Nagihan Bostanci (466961)
Nathalie Selevsek (700308)
Thomas Thurnheer (366738)
Georgios N. Belibasakis (140456)

March 2015

Number of uniquely identified and overlapping proteins per species in two biofilm groups.</p

Unique sequences in each phage pool.

Andrea Queiroz Maranhão (453020)
Maria Beatriz Walter Costa (453021)
Leonardo Guedes (453022)
Pedro Manoel Moraes-Vieira (163259)
Tainá Raiol (453023)
Marcelo Macedo Brigido (199195)

September 2013

Number of unique sequences in R2 not identified in R1.Total number of unique nucleotide se...

Spectral count and protein totals.

Yvonne S. Ziegler (598997)
James J. Moresco (569744)
Patricia G. Tu (569745)
John R. Yates III (133663)
Ann M. Nardulli (598998)

July 2014

Each cell line was analyzed for total number of spectra generated and resulting number of protein...

Number of identified (A) and quantified proteins (B) in four biological duplicates.

Lina Zhang (112887)
Sjef Boeren (196327)
Jos A. Hageman (217349)
Toon van Hooijdonk (352568)
Jacques Vervoort (225685)
Kasper Hettinga (352565)

February 2015

Number of identified (A) and quantified proteins (B) in four biological duplicates.</p

The number of common UniqTag identifiers between build 75 of the Ensembl human genome and nine other builds, the number of common gene and protein identifiers between builds, and the number of genes with peptide sequences that are identical between builds.

Shaun D. Jackman (746366)
Joerg Bohlmann (280238)
İnanç Birol (5660038)

May 2015

The number of common UniqTag identifiers between build 75 of the Ensembl human genome and nine ot...

Number of ssRNA bacteriophage species based on varying amino acid identity cut-offs.

Siddharth R. Krishnamurthy (2580355)
Andrew B. Janowski (2580352)
Guoyan Zhao (24853)
Dan Barouch (2580349)
David Wang (11235)

March 2016

Number of ssRNA bacteriophage species based on varying amino acid identity cut-offs.</p

Numbers of differentially expressed transcripts and corresponding protein products in different comparisons.

Chatravee Pichitpunpong (6524255)
Surangrat Thongkorn (5106860)
Songphon Kanlayaprasit (6524258)
Wasana Yuwattana (6524261)
Waluga Plaingam (6524264)
Siriporn Sangsuthum (6524267)
Wan Mohd Aizat (6524270)
Syarul Nataqain Baharum (6524273)
Tewin Tencomnao (2864969)
Valerie Wailin Hu (5545568)
Tewarit Sarachana (229926)

March 2019

Numbers of differentially expressed transcripts and corresponding protein products in different comp...

Decrease in host peptides after MV infection.

Ingrid M. M. Schellens (377152)
Ilka Hoof (58673)
Hugo D. Meiring (796644)
Sanne N. M. Spijkers (796645)
Martien C. M. Poelen (358390)
Jacqueline A. M. van Gaans-van den Brink (508737)
Kees van der Poel (796646)
Ana I. Costa (796647)
Cecile A. C. M. van Els (2206870)
Debbie van Baarle (164622)
Can Kesmir (2206873)

September 2015

(A) The number of unique peptides is plotted per infection state. Each line represents one HLA mo...

The number of differentially expressed genes between different pairs samples.

Zhansheng Li (537088)
Yumei Liu (286628)
Lingyun Li (142918)
Zhiyuan Fang (537089)
Limei Yang (223781)
Mu Zhuang (537090)
Yangyong Zhang (537091)
Honghao Lv (800307)

March 2019

The number of differentially expressed genes between different pairs samples.</p

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.

Liang Guo (95092)
Jennifer A. Smith (92064)
Michelle Abelson (5798132)
Irina Vlasova-St. Louis (5798135)
Leslie A. Schiff (5798138)
Paul R. Bohjanen (234753)

September 2018

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.</...

The number of proteins and peptides (in parentheses) identified for each virulence factor.

Armand Paauw (255206)
Holger C. Scholz (9118844)
Roos H. Mars-Groenendijk (3087930)
Lennard J. M. Dekker (8041340)
Theo M. Luider (242944)
Hans C. van Leeuwen (2734018)

January 2023

The number of proteins and peptides (in parentheses) identified for each virulence factor.</p

Number of common differentially expressed genes between different time points post-inoculation.

Chengxiang Hou (533401)
Guangxing Qin (429317)
Ting Liu (45625)
Tao Geng (32392)
Kun Gao (161056)
Zhonghua Pan (533402)
Heying Qian (533403)
Xijie Guo (429318)

March 2014

Number of common differentially expressed genes between different time points post-inoculation.</...

Number of upregulated genes in individual cell lines and top five of GO Biological Processes for each gene set.

Brita Singers Sørensen (783581)
Morten Busk (783582)
Jens Overgaard (48654)
Michael R. Horsman (642000)
Jan Alsner (48651)

August 2015

Number of upregulated genes in individual cell lines and top five of GO Biological Processes for ...

Number of proteins, peptides, and spectra identified by LC-MS/MS in cellular (MOI = 0.1 and 1) or PEG-enriched viral fractions (MOI = 1) at each time point of infection.

Jacque C. Young (161065)
Brian D. Dill (161071)
Chongle Pan (117744)
Robert L. Hettich (117757)
Jillian F. Banfield (161078)
Manesh Shah (117747)
Christophe Fremaux (161090)
Philippe Horvath (112559)
Rodolphe Barrangou (134837)
Nathan C. VerBerkmoes (2118220)

May 2012

Proteins, peptides, and spectral values are based on non-redundant identifications.All num...

Total number of proteins identified at 99% protein probability and total spectra at 95% peptide probability, with 2 minimum peptides.

Sowmyalakshmi Subramanian (3080607)
Emily Ricci (3080610)
Alfred Souleimanov (3080604)
Donald L. Smith (184414)

August 2016

Total number of proteins identified at 99% protein probability and total spectra at 95% peptide p...

Number of uniquely identified and overlapping proteins per species in two biofilm groups.

Kai Bao (700307)
Nagihan Bostanci (466961)
Nathalie Selevsek (700308)
Thomas Thurnheer (366738)
Georgios N. Belibasakis (140456)

March 2015

Number of uniquely identified and overlapping proteins per species in two biofilm groups.</p

Unique sequences in each phage pool.

Andrea Queiroz Maranhão (453020)
Maria Beatriz Walter Costa (453021)
Leonardo Guedes (453022)
Pedro Manoel Moraes-Vieira (163259)
Tainá Raiol (453023)
Marcelo Macedo Brigido (199195)

September 2013

Number of unique sequences in R2 not identified in R1.Total number of unique nucleotide se...

Spectral count and protein totals.

Yvonne S. Ziegler (598997)
James J. Moresco (569744)
Patricia G. Tu (569745)
John R. Yates III (133663)
Ann M. Nardulli (598998)

July 2014

Each cell line was analyzed for total number of spectra generated and resulting number of protein...

Number of identified (A) and quantified proteins (B) in four biological duplicates.

Lina Zhang (112887)
Sjef Boeren (196327)
Jos A. Hageman (217349)
Toon van Hooijdonk (352568)
Jacques Vervoort (225685)
Kasper Hettinga (352565)

February 2015

Number of identified (A) and quantified proteins (B) in four biological duplicates.</p

The number of common UniqTag identifiers between build 75 of the Ensembl human genome and nine other builds, the number of common gene and protein identifiers between builds, and the number of genes with peptide sequences that are identical between builds.

Shaun D. Jackman (746366)
Joerg Bohlmann (280238)
İnanç Birol (5660038)

May 2015

The number of common UniqTag identifiers between build 75 of the Ensembl human genome and nine ot...

Number of ssRNA bacteriophage species based on varying amino acid identity cut-offs.

Siddharth R. Krishnamurthy (2580355)
Andrew B. Janowski (2580352)
Guoyan Zhao (24853)
Dan Barouch (2580349)
David Wang (11235)

March 2016

Number of ssRNA bacteriophage species based on varying amino acid identity cut-offs.</p

Numbers of differentially expressed transcripts and corresponding protein products in different comparisons.

Chatravee Pichitpunpong (6524255)
Surangrat Thongkorn (5106860)
Songphon Kanlayaprasit (6524258)
Wasana Yuwattana (6524261)
Waluga Plaingam (6524264)
Siriporn Sangsuthum (6524267)
Wan Mohd Aizat (6524270)
Syarul Nataqain Baharum (6524273)
Tewin Tencomnao (2864969)
Valerie Wailin Hu (5545568)
Tewarit Sarachana (229926)

March 2019

Numbers of differentially expressed transcripts and corresponding protein products in different comp...

Decrease in host peptides after MV infection.

Ingrid M. M. Schellens (377152)
Ilka Hoof (58673)
Hugo D. Meiring (796644)
Sanne N. M. Spijkers (796645)
Martien C. M. Poelen (358390)
Jacqueline A. M. van Gaans-van den Brink (508737)
Kees van der Poel (796646)
Ana I. Costa (796647)
Cecile A. C. M. van Els (2206870)
Debbie van Baarle (164622)
Can Kesmir (2206873)

September 2015

(A) The number of unique peptides is plotted per infection state. Each line represents one HLA mo...

The number of differentially expressed genes between different pairs samples.

Zhansheng Li (537088)
Yumei Liu (286628)
Lingyun Li (142918)
Zhiyuan Fang (537089)
Limei Yang (223781)
Mu Zhuang (537090)
Yangyong Zhang (537091)
Honghao Lv (800307)

March 2019

The number of differentially expressed genes between different pairs samples.</p

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.

Liang Guo (95092)
Jennifer A. Smith (92064)
Michelle Abelson (5798132)
Irina Vlasova-St. Louis (5798135)
Leslie A. Schiff (5798138)
Paul R. Bohjanen (234753)

September 2018

Number of cellular transcripts that were stabilized and up-regulated following reovirus infection.</...

Number of unique peptides, source proteins and genes eluted per cell line (before and after MV infection combined).

Abstract

Extracted data

Number of unique peptides, source proteins and genes eluted per cell line (before and after MV infection combined).

Abstract

Extracted data

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