Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

O'Leary, Shannon
Puritz, Jonathan
Willis, Stuart
Hollenbeck, Christopher
Portnoy, David S.

August 2019

Sequencing reduced-representation libraries of restriction site-associated DNA (RADseq) to identify ...

DRYAD SNP data for Limborg et al. 2012

Limborg, Morten T.
Blankenship, Scott M.
Young, Sewall F.
Utter, Fred M.
Seeb, Lisa W.
Hansen, Mette H. H.
Seeb, James E.

August 2012

This file contains the SNP genotype data used for the associated publication. Genotypes are presente...

Filtered SNPs

Momigliano, Paolo
Jokinen, Henri
Fraimout, Antoine
Florin, Ann-Britt
Norkko, Alf
Merilä, Juha

May 2017

SNP genotypes for each individual, filtered according to the parameters explained in the manuscripts...

Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

McCormack, John
Tsai, Whitney L. E.
Faircloth, Brant C.

September 2015

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Q30-QD2-MISS_0.75.recode.vcf.gz

McCormack, John
Tsai, Whitney L. E.
Faircloth, Brant C.

September 2015

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Structure_infile_SNPS_jays.txt.gz

John McCormack (2554693)
Whitney L. E. Tsai (2827838)
Brant C. Faircloth (143432)

October 2016

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Picq_et_al_2017_raw_and_filtered_SNP_data

Picq, Sandrine
Keena, Melody
Havill, Nathan
Stewart, Don
Pouliot, Esther
Boyle, Brian
Levesque, Roger
Hamelin, Richard
Cusson, Michel

September 2017

The file contains all of the SNP data used in our article. The files named HapMap.fas.txt, HapMap.hm...

filtered SNP set used for population structure and clustering analysis

Dhami, Manpreet K.
Hartwig, Thomas
Letten, Andrew
Michael, Banf
Fukami, Tadashi

February 2018

These SNPs were called from 109 Metchnikowia sp whole genomes mapped to MR_a10 reference genome usin...

Filtered SNP dataset

Julia M. I. Barth (7913801)
David Villegas-Ríos (449900)
Carla Freitas (3243381)
Even Moland (455241)
Bastiaan Star (532216)
Carl André (227715)
Halvor Knutsen (426959)
Ian Bradbury (741605)
Jan Dierking (515371)
Christoph Petereit (3262107)
David Righton (2914835)
Julian Metcalfe (6163409)
Kjetill S. Jakobsen (7913804)
Esben M. Olsen (7913807)
Sissel Jentoft (453341)

December 2018

The filtered SNP dataset used in Barth et al. as PLINK/MERLIN/Haploview text genotype table (.ped), ...

slimsnps2.4.vcf

Carrie Wessinger (5505647)
John Kelly (582353)
Peng Jiang (16544)
Mark Rausher (5505653)
Lena Hileman (5505650)

July 2018

Variant call file listing genotypes for the filtered set of SNPs in the initial scan used in downstr...

Filtered SNP genotype data set for Brazil, Massachussets and Florida

Plough, Louis V.

April 2017

This is a genepop formatted file (.gen) with SNP data for the three populations examined in this stu...

SNP genotypes

Jean-Sébastien Moore (3197889)
Vincent Bourret (3275256)
Mélanie Dionne (3272766)
Ian Bradbury (741605)
Patrick O’Reilly (3275250)
Matthew Kent (497743)
Gérald Chaput (3275253)
Louis Bernatchez (33427)

October 2016

Genotype data for all 3,192 SNP loci (i.e., SNPs after filters, see manuscript for details) and all ...

A Scheme for Filtering SNPs Imputed in 8,842 Korean Individuals Based on the International HapMap Project Data

Kichan Lee
Sangsoo Kim

January 2009

Genome-wide association (GWA) studies may benefit from the inclusion of imputed SNPs into their data...

vcf_genotypes_4372_SNPs

Ellika Faust (4902535)
Kim T Halvorsen (5024543)
Per Andersen (2868050)
Halvor Knutsen (426959)
André Carl (5024540)

March 2018

VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes...

genepop_file_4357_SNPs

Faust, Ellika
Halvorsen, Kim T
Andersen, Per
Knutsen, Halvor
Carl, André

February 2018

Text file (genepop input format) containing the genotypes used for population genomics analysis. The...

These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

O'Leary, Shannon
Puritz, Jonathan
Willis, Stuart
Hollenbeck, Christopher
Portnoy, David S.

August 2019

Sequencing reduced-representation libraries of restriction site-associated DNA (RADseq) to identify ...

DRYAD SNP data for Limborg et al. 2012

Limborg, Morten T.
Blankenship, Scott M.
Young, Sewall F.
Utter, Fred M.
Seeb, Lisa W.
Hansen, Mette H. H.
Seeb, James E.

August 2012

This file contains the SNP genotype data used for the associated publication. Genotypes are presente...

Filtered SNPs

Momigliano, Paolo
Jokinen, Henri
Fraimout, Antoine
Florin, Ann-Britt
Norkko, Alf
Merilä, Juha

May 2017

SNP genotypes for each individual, filtered according to the parameters explained in the manuscripts...

Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

McCormack, John
Tsai, Whitney L. E.
Faircloth, Brant C.

September 2015

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Q30-QD2-MISS_0.75.recode.vcf.gz

McCormack, John
Tsai, Whitney L. E.
Faircloth, Brant C.

September 2015

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Structure_infile_SNPS_jays.txt.gz

John McCormack (2554693)
Whitney L. E. Tsai (2827838)
Brant C. Faircloth (143432)

October 2016

Filtered SNPs that have undergone VariantFiltration and also selection for presence in 75% of indivi...

Picq_et_al_2017_raw_and_filtered_SNP_data

Picq, Sandrine
Keena, Melody
Havill, Nathan
Stewart, Don
Pouliot, Esther
Boyle, Brian
Levesque, Roger
Hamelin, Richard
Cusson, Michel

September 2017

The file contains all of the SNP data used in our article. The files named HapMap.fas.txt, HapMap.hm...

filtered SNP set used for population structure and clustering analysis

Dhami, Manpreet K.
Hartwig, Thomas
Letten, Andrew
Michael, Banf
Fukami, Tadashi

February 2018

These SNPs were called from 109 Metchnikowia sp whole genomes mapped to MR_a10 reference genome usin...

Filtered SNP dataset

Julia M. I. Barth (7913801)
David Villegas-Ríos (449900)
Carla Freitas (3243381)
Even Moland (455241)
Bastiaan Star (532216)
Carl André (227715)
Halvor Knutsen (426959)
Ian Bradbury (741605)
Jan Dierking (515371)
Christoph Petereit (3262107)
David Righton (2914835)
Julian Metcalfe (6163409)
Kjetill S. Jakobsen (7913804)
Esben M. Olsen (7913807)
Sissel Jentoft (453341)

December 2018

The filtered SNP dataset used in Barth et al. as PLINK/MERLIN/Haploview text genotype table (.ped), ...

slimsnps2.4.vcf

Carrie Wessinger (5505647)
John Kelly (582353)
Peng Jiang (16544)
Mark Rausher (5505653)
Lena Hileman (5505650)

July 2018

Variant call file listing genotypes for the filtered set of SNPs in the initial scan used in downstr...

Filtered SNP genotype data set for Brazil, Massachussets and Florida

Plough, Louis V.

April 2017

This is a genepop formatted file (.gen) with SNP data for the three populations examined in this stu...

SNP genotypes

Jean-Sébastien Moore (3197889)
Vincent Bourret (3275256)
Mélanie Dionne (3272766)
Ian Bradbury (741605)
Patrick O’Reilly (3275250)
Matthew Kent (497743)
Gérald Chaput (3275253)
Louis Bernatchez (33427)

October 2016

Genotype data for all 3,192 SNP loci (i.e., SNPs after filters, see manuscript for details) and all ...

A Scheme for Filtering SNPs Imputed in 8,842 Korean Individuals Based on the International HapMap Project Data

Kichan Lee
Sangsoo Kim

January 2009

Genome-wide association (GWA) studies may benefit from the inclusion of imputed SNPs into their data...

vcf_genotypes_4372_SNPs

Ellika Faust (4902535)
Kim T Halvorsen (5024543)
Per Andersen (2868050)
Halvor Knutsen (426959)
André Carl (5024540)

March 2018

VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes...

genepop_file_4357_SNPs

Faust, Ellika
Halvorsen, Kim T
Andersen, Per
Knutsen, Halvor
Carl, André

February 2018

Text file (genepop input format) containing the genotypes used for population genomics analysis. The...

These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

O'Leary, Shannon
Puritz, Jonathan
Willis, Stuart
Hollenbeck, Christopher
Portnoy, David S.

August 2019

Sequencing reduced-representation libraries of restriction site-associated DNA (RADseq) to identify ...

DRYAD SNP data for Limborg et al. 2012

Limborg, Morten T.
Blankenship, Scott M.
Young, Sewall F.
Utter, Fred M.
Seeb, Lisa W.
Hansen, Mette H. H.
Seeb, James E.

August 2012

This file contains the SNP genotype data used for the associated publication. Genotypes are presente...

Filtered SNPs

Momigliano, Paolo
Jokinen, Henri
Fraimout, Antoine
Florin, Ann-Britt
Norkko, Alf
Merilä, Juha

May 2017

SNP genotypes for each individual, filtered according to the parameters explained in the manuscripts...

Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

Abstract

Extracted data

Q30-QD2-MISS_0.75.recode.snapp.nexus.gz

Abstract

Extracted data

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