Additional file 4: Table S3. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Additional file 6: Table S4 of Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

Min Jin (333526)
Xuehai Zhang (2405686)
Mingchao Zhao (3664615)
Min Deng (114029)
Yuanhao Du (3664612)
Yang Zhou (65942)
Shouchuang Wang (3664609)
Takayuki Tohge (86280)
Alisdair Fernie (4072)
Lothar Willmitzer (227677)
Yariv Brotman (390035)
Jianbing Yan (109373)
Weiwei Wen (178912)

January 2017

List and detailed information of candidate genes within the significant loci identified by GWAS. (XL...

Additional file 1: Table S1. of Genetic basis of maize kernel starch content revealed by high-density single nucleotide polymorphism markers in a recombinant inbred line population

Tingting Wang (123983)
Min Wang (21070)
Shuting Hu (3457766)
Yingni Xiao (3457769)
Hao Tong (529793)
Qingchun Pan (109361)
Jiquan Xue (3190359)
Jianbing Yan (109373)
Jiansheng Li (109370)
Xiaohong Yang (109367)

December 2015

Summary of SNPs polymorphic between two parents in the CI7/K22 RIL population. Table S2 Summary of t...

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Additional file 8: Table S6. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Information about joint recombination bin maps for the combined CN-NAM and US-NAM populations. (XLSX...

Additional file 6: Table S5. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Joint linkage analysis summary for days to tasseling trait in CN-NAM and US-NAM, respectively. (XLSX...

Additional file 2: Table S2. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Recombination bin map information within the 36 families of the two NAM populations, based on high-q...

Additional file 3: Figure S1. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Joint recombination bin maps in (a) CN-NAM and (b) US-NAM. (a) CN-NAM map included 5,435 recombinati...

Additional file 5: Table S4. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

QTLs identified for days to tasseling trait within the 36 families of the two NAM populations. (XLSX...

Additional file 9: Table S7. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Phenotypic data for days to tasseling in six environments for the CN-NAM population. (XLSX 193 kb

Additional file 10: Table S8. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Phenotypic data for days to tasseling in five environments for the US-NAM population. (XLSX 179 kb

Additional file 7: Figure S2. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Physical locations of days to tasseling QTLs and candidate genes in the 36 families. Chromosomes are...

Additional file 10: Figure S4. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

Hongjun Liu (664738)
Yongchao Niu (3315834)
Pedro Gonzalez-Portilla (3461213)
Huangkai Zhou (765531)
Liya Wang (161745)
Tao Zuo (350509)
Cheng Qin (703381)
Shuaishuai Tai (3417530)
Constantin Jansen (3461216)
Yaou Shen (176530)
Haijian Lin (176545)
Michael Lee (353518)
Doreen Ware (14316)
Zhiming Zhang (176541)
Thomas LĂźbberstedt (3461219)
Guangtang Pan (176561)

December 2015

Correction of a potential assembly error in B73 reference. A fragment consisting of 4 alignment base...

Additional file 4: Table S2. of Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

Qijian Song (277210)
Jerry Jenkins (172005)
Gaofeng Jia (277212)
David Hyten (3406658)
Vince Pantalone (3406655)
Scott Jackson (183074)
Jeremy Schmutz (172027)
Perry Cregan (741207)

January 2016

Genomic position and corresponding gene IDs of the SSR and SNP markers in the Wm82.a2.v1 assembly, t...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 4: Figure S2. of Genetic architecture of the maize kernel row number revealed by combining QTL mapping using a high-density genetic map and bulked segregant RNA sequencing

Changlin Liu (191503)
Qiang Zhou (29805)
Le Dong (3421448)
Hui Wang (30400)
Fang Liu (13271)
Jianfeng Weng (191490)
Xinhai Li (191514)
Chuanxiao Xie (191495)

November 2016

Recombination map of the F2 population derived from inbreds B73 and abe2. The recombination map cons...

Additional file 6: Table S4 of Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

Min Jin (333526)
Xuehai Zhang (2405686)
Mingchao Zhao (3664615)
Min Deng (114029)
Yuanhao Du (3664612)
Yang Zhou (65942)
Shouchuang Wang (3664609)
Takayuki Tohge (86280)
Alisdair Fernie (4072)
Lothar Willmitzer (227677)
Yariv Brotman (390035)
Jianbing Yan (109373)
Weiwei Wen (178912)

January 2017

List and detailed information of candidate genes within the significant loci identified by GWAS. (XL...

Additional file 1: Table S1. of Genetic basis of maize kernel starch content revealed by high-density single nucleotide polymorphism markers in a recombinant inbred line population

Tingting Wang (123983)
Min Wang (21070)
Shuting Hu (3457766)
Yingni Xiao (3457769)
Hao Tong (529793)
Qingchun Pan (109361)
Jiquan Xue (3190359)
Jianbing Yan (109373)
Jiansheng Li (109370)
Xiaohong Yang (109367)

December 2015

Summary of SNPs polymorphic between two parents in the CI7/K22 RIL population. Table S2 Summary of t...

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Additional file 8: Table S6. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Information about joint recombination bin maps for the combined CN-NAM and US-NAM populations. (XLSX...

Additional file 6: Table S5. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Joint linkage analysis summary for days to tasseling trait in CN-NAM and US-NAM, respectively. (XLSX...

Additional file 2: Table S2. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Recombination bin map information within the 36 families of the two NAM populations, based on high-q...

Additional file 3: Figure S1. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Joint recombination bin maps in (a) CN-NAM and (b) US-NAM. (a) CN-NAM map included 5,435 recombinati...

Additional file 5: Table S4. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

QTLs identified for days to tasseling trait within the 36 families of the two NAM populations. (XLSX...

Additional file 9: Table S7. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Phenotypic data for days to tasseling in six environments for the CN-NAM population. (XLSX 193 kb

Additional file 10: Table S8. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Phenotypic data for days to tasseling in five environments for the US-NAM population. (XLSX 179 kb

Additional file 7: Figure S2. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Chunhui Li (501186)
Yongxiang Li (116212)
Peter Bradbury (227522)
Xun Wu (382798)
Yunsu Shi (711297)
Yanchun Song (711298)
Dengfeng Zhang (711299)
Eli Rodgers-Melnick (3436874)
Edward Buckler (61208)
Zhiwu Zhang (240061)
Yu Li (183836)
Tianyu Wang (397547)

September 2015

Physical locations of days to tasseling QTLs and candidate genes in the 36 families. Chromosomes are...

Additional file 10: Figure S4. of An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize

Hongjun Liu (664738)
Yongchao Niu (3315834)
Pedro Gonzalez-Portilla (3461213)
Huangkai Zhou (765531)
Liya Wang (161745)
Tao Zuo (350509)
Cheng Qin (703381)
Shuaishuai Tai (3417530)
Constantin Jansen (3461216)
Yaou Shen (176530)
Haijian Lin (176545)
Michael Lee (353518)
Doreen Ware (14316)
Zhiming Zhang (176541)
Thomas LĂźbberstedt (3461219)
Guangtang Pan (176561)

December 2015

Correction of a potential assembly error in B73 reference. A fragment consisting of 4 alignment base...

Additional file 4: Table S2. of Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

Qijian Song (277210)
Jerry Jenkins (172005)
Gaofeng Jia (277212)
David Hyten (3406658)
Vince Pantalone (3406655)
Scott Jackson (183074)
Jeremy Schmutz (172027)
Perry Cregan (741207)

January 2016

Genomic position and corresponding gene IDs of the SSR and SNP markers in the Wm82.a2.v1 assembly, t...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 4: Figure S2. of Genetic architecture of the maize kernel row number revealed by combining QTL mapping using a high-density genetic map and bulked segregant RNA sequencing

Changlin Liu (191503)
Qiang Zhou (29805)
Le Dong (3421448)
Hui Wang (30400)
Fang Liu (13271)
Jianfeng Weng (191490)
Xinhai Li (191514)
Chuanxiao Xie (191495)

November 2016

Recombination map of the F2 population derived from inbreds B73 and abe2. The recombination map cons...

Additional file 6: Table S4 of Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

Min Jin (333526)
Xuehai Zhang (2405686)
Mingchao Zhao (3664615)
Min Deng (114029)
Yuanhao Du (3664612)
Yang Zhou (65942)
Shouchuang Wang (3664609)
Takayuki Tohge (86280)
Alisdair Fernie (4072)
Lothar Willmitzer (227677)
Yariv Brotman (390035)
Jianbing Yan (109373)
Weiwei Wen (178912)

January 2017

List and detailed information of candidate genes within the significant loci identified by GWAS. (XL...

Additional file 1: Table S1. of Genetic basis of maize kernel starch content revealed by high-density single nucleotide polymorphism markers in a recombinant inbred line population

Tingting Wang (123983)
Min Wang (21070)
Shuting Hu (3457766)
Yingni Xiao (3457769)
Hao Tong (529793)
Qingchun Pan (109361)
Jiquan Xue (3190359)
Jianbing Yan (109373)
Jiansheng Li (109370)
Xiaohong Yang (109367)

December 2015

Summary of SNPs polymorphic between two parents in the CI7/K22 RIL population. Table S2 Summary of t...

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Additional file 4: Table S3. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Abstract

Extracted data

Additional file 4: Table S3. of Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize

Abstract

Extracted data

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