<p><sup>1</sup>Transcription Factor</p><p><sup>2</sup>The P-value denotes the significance of overlap with genes in the cluster (i.e., transcription factor expected to be activated or inhibited given the observed genes in the cluster) as calculated by Ingenuity Pathway Analysis.</p><p><sup>3</sup>Type of molecule: TR = Transcription Regulator; LDNR = Ligand-dependent nuclear receptor</p><p>*Included as DEG in cluster 4.</p><p>Reported are the 31 transcription factors with a p-value of overlap <0.0005. The p-value of overlap indicates the statistical significance of genes in the dataset that are downstream of the transcription factor. Complete results are available in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0137...
Background Transcription factor binding to DNA requires both an appropriate binding element and suit...
<p>The first column is the cluster identifier. The second column is the enriched TRANSFAC Pro v8.2 t...
*<p>AP1, complex of transcription factors FOS and JUN; AP2, transcription factor AP-2; ATF, activati...
1<p>z-score indications significance of prediction of activation status of the respective transcript...
<p>The number in parentheses in the first column is the cluster size. For each TF, we show the numbe...
Biophysical parameters that govern transcription factors activity are binding locations across the g...
It has been hypothesized that the net expression of a gene is determined by the combined effects of ...
<p>Transcription factors tested are presented at the top of the diagram. The cluster content is show...
It has been hypothesized that the net expression of a gene is determined by the combined effects of ...
<p>Cluster maps of enriched transcription factor binding sites (TFBS) in promoters of genes that are...
<p>Method: The genes in the “TNFα profile” were used to query to search an interaction database of 2...
<p>A) Heat map indicates result of un-supervised hierarchical clustering for 743 gene promoters with...
<p>For each comparison the number of overlapping genes and a hypergeometrical p-value are shown. Ent...
The term ‘transcription factor’ refers to a large family of proteins, which exert transcriptional co...
Administered in critical doses, drugs and chemicals can damage organs and tissues by turning numerou...
Background Transcription factor binding to DNA requires both an appropriate binding element and suit...
<p>The first column is the cluster identifier. The second column is the enriched TRANSFAC Pro v8.2 t...
*<p>AP1, complex of transcription factors FOS and JUN; AP2, transcription factor AP-2; ATF, activati...
1<p>z-score indications significance of prediction of activation status of the respective transcript...
<p>The number in parentheses in the first column is the cluster size. For each TF, we show the numbe...
Biophysical parameters that govern transcription factors activity are binding locations across the g...
It has been hypothesized that the net expression of a gene is determined by the combined effects of ...
<p>Transcription factors tested are presented at the top of the diagram. The cluster content is show...
It has been hypothesized that the net expression of a gene is determined by the combined effects of ...
<p>Cluster maps of enriched transcription factor binding sites (TFBS) in promoters of genes that are...
<p>Method: The genes in the “TNFα profile” were used to query to search an interaction database of 2...
<p>A) Heat map indicates result of un-supervised hierarchical clustering for 743 gene promoters with...
<p>For each comparison the number of overlapping genes and a hypergeometrical p-value are shown. Ent...
The term ‘transcription factor’ refers to a large family of proteins, which exert transcriptional co...
Administered in critical doses, drugs and chemicals can damage organs and tissues by turning numerou...
Background Transcription factor binding to DNA requires both an appropriate binding element and suit...
<p>The first column is the cluster identifier. The second column is the enriched TRANSFAC Pro v8.2 t...
*<p>AP1, complex of transcription factors FOS and JUN; AP2, transcription factor AP-2; ATF, activati...