Proteomic identification and quantification of methanol metabolic enzymes and control proteins in peroxisomal fractions and homogenates of P. pastoris cells grown on methanol. Containing the following three sheets: Protein hits: contains all identified proteins that met the threshold in at least one sample, with their respective MASCOT scores, number of peptides, and percent sequence coverage. Peptide hits: list of all identified peptides, their MASCOT scores, mass and charge values, and intensities. Peptides used for quant + areas: lists all peptides of the proteins in Table 3 that were used for quantification, and their respective peak areas in the different samples. (XLSX 879 kb
Figure S3. Scatterplot of the yeast dataset showing the position of the true positives and the true ...
Dataset proteomic analysis of a 45âday organoid. List of identified proteins with the respective a...
Additional file 3: Table S1. Comparison of OTU relative abundance between four MFC developmental con...
Transcriptomic, proteomic, and metabolomic regulation of P. pastoris during methylotrophic growth. C...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
Figure S2. Proteomic pipeline, sample-to-sample comparison, and insights from the in vitro PC proteo...
Enrichment of the peroxisomal marker protein Pex3p in the peroxisomal fraction. (PDF 271 kb
Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...
Metabolite, global peptide, phosphopeptide, global proteome, phosphoproteome, and phosphosite quanti...
Figure S1. Whole-cell absorption spectra of Synechocystis sp. PCC6803 wild-type strain, ethanol-prod...
Additional file 1: Figure S1. Mean expression values (microarray data) of the carboxypeptidase B gen...
Experience from different fields of life sciences suggests that accessible, complete reference maps ...
All proteins identified in the qualitative proteome analysis. Supplemental qualitative proteome anal...
The importance of obtaining comprehensive and accurate information from cellular proteomics experime...
Peptide (charge 2+) identification results from search against simulated proteogenomic databases for...
Figure S3. Scatterplot of the yeast dataset showing the position of the true positives and the true ...
Dataset proteomic analysis of a 45âday organoid. List of identified proteins with the respective a...
Additional file 3: Table S1. Comparison of OTU relative abundance between four MFC developmental con...
Transcriptomic, proteomic, and metabolomic regulation of P. pastoris during methylotrophic growth. C...
Workflow for generating a simulated proteogenomic database for yeast. (DOCX 743Â kb
Figure S2. Proteomic pipeline, sample-to-sample comparison, and insights from the in vitro PC proteo...
Enrichment of the peroxisomal marker protein Pex3p in the peroxisomal fraction. (PDF 271 kb
Table S1. Strains used in this study. Table S2. A total of 1039 normalized protein 14N/15N isotopic ...
Metabolite, global peptide, phosphopeptide, global proteome, phosphoproteome, and phosphosite quanti...
Figure S1. Whole-cell absorption spectra of Synechocystis sp. PCC6803 wild-type strain, ethanol-prod...
Additional file 1: Figure S1. Mean expression values (microarray data) of the carboxypeptidase B gen...
Experience from different fields of life sciences suggests that accessible, complete reference maps ...
All proteins identified in the qualitative proteome analysis. Supplemental qualitative proteome anal...
The importance of obtaining comprehensive and accurate information from cellular proteomics experime...
Peptide (charge 2+) identification results from search against simulated proteogenomic databases for...
Figure S3. Scatterplot of the yeast dataset showing the position of the true positives and the true ...
Dataset proteomic analysis of a 45âday organoid. List of identified proteins with the respective a...
Additional file 3: Table S1. Comparison of OTU relative abundance between four MFC developmental con...