Core genome phylogenetic tree for Escherichia/Shigella sp. The tree is mid-point rooted. Reference genomes representing previously published phylogroups are indicated. Strains noted to be in equivalence groups are similarly coloured. (PDF 40 kb
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Complete Phylogenetic Tree of S. aureus Reference Strains. Whole-genome phylogenetic analysis of all...
Core genome phylogenetic tree for Salmonella sp. The tree is mid-point rooted. Strains noted to be i...
Core genome phylogenetic tree for Klebsiella sp. The tree is mid-point rooted. Strains noted to be i...
Core genome phylogenetic tree for Proteus sp. The tree is mid-point rooted. Strains noted to be in e...
Figure S2. Phylogenetic tree based on the amino acid sequences of the srl operon in the 66 Enterobac...
Table S4. Selected references for each genus and species. Figure S5. Number of plasmids detected in ...
List of complete S. flexneri genomes and their accession numbers used for comparative genomics. (PDF...
Original Collection metadata and laboratory determination of plasmid content and species. (XLSX 112 ...
The proportion of reads that map to genes that confer antibiotic resistance is associated with Esche...
The comparison of trees built for the set of Proteobacteria genomes provided by FastTree. Figure S2....
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Phylogenetic tree based on 16S rRNA gene sequences of the representative strains of Listeria and str...
Maximum-likelihood phylogenetic tree based on the comparative analysis of 16S rRNA gene sequences. P...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Complete Phylogenetic Tree of S. aureus Reference Strains. Whole-genome phylogenetic analysis of all...
Core genome phylogenetic tree for Salmonella sp. The tree is mid-point rooted. Strains noted to be i...
Core genome phylogenetic tree for Klebsiella sp. The tree is mid-point rooted. Strains noted to be i...
Core genome phylogenetic tree for Proteus sp. The tree is mid-point rooted. Strains noted to be in e...
Figure S2. Phylogenetic tree based on the amino acid sequences of the srl operon in the 66 Enterobac...
Table S4. Selected references for each genus and species. Figure S5. Number of plasmids detected in ...
List of complete S. flexneri genomes and their accession numbers used for comparative genomics. (PDF...
Original Collection metadata and laboratory determination of plasmid content and species. (XLSX 112 ...
The proportion of reads that map to genes that confer antibiotic resistance is associated with Esche...
The comparison of trees built for the set of Proteobacteria genomes provided by FastTree. Figure S2....
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Phylogenetic tree based on 16S rRNA gene sequences of the representative strains of Listeria and str...
Maximum-likelihood phylogenetic tree based on the comparative analysis of 16S rRNA gene sequences. P...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Complete Phylogenetic Tree of S. aureus Reference Strains. Whole-genome phylogenetic analysis of all...