Intra-assay variation comparison of Hi3 peptide quantitation to targeted proteomics studies of plasma proteins.

Identification of HHV-6B targets of the IFN-γ response.

Aniuska Becerra-Artiles (829447)
Omar Dominguez-Amorocho (829448)
Lawrence J. Stern (49046)
J. Mauricio Calvo-Calle (80390)

November 2015

A. Schematic of the experimental approach: fractionation of proteins by SDS-PAGE; measurement of ...

Validation of the intra and inter-individual analysis by western blotting.

Elsa Kichine (477988)
Marcos Di Falco (477989)
Barbara F. Hales (111931)
Bernard Robaire (339292)
Peter Chan (477990)

October 2013

The coefficient of variation of four proteins with various dispersion levels was calculated by we...

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based CCP3 test, regarding peptide biomarker selection.

Cristina García-Moreno (6659672)
María José Gómara (6659675)
María José Bleda (6659678)
Raimon Sanmartí (368935)
Isabel Haro (2148178)

May 2019

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based C...

Quantitation of plasma protein concentrations by HI3, QconCAT and immunoassay.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

(a) Intra-assay variation of apolipoproteins by HI3 and QconCAT on a single day of measurements. ...

Hi3 peptide quantitative analysis of abundant plasma proteins.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

Median (ng/mL): median of protein concentrations determined from number of samples shown i...

HI3 peptide quantitation with a single protein digest standard and digest standard comparison.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

(a) Summed signal intensity of the protein digest standard ENO1 (grey square) and ADH1 (dark grey...

Intra- and inter-assay variation for the Versant kPCR (plasma) according to log copy number/mL of sample (data extracted from references [39], [50]).

Kimberly A. Sollis (319691)
Pieter W. Smit (458975)
Susan Fiscus (243736)
Nathan Ford (59436)
Marco Vitoria (183846)
Shaffiq Essajee (363292)
David Barnett (367464)
Ben Cheng (379595)
Suzanne M. Crowe (220340)
Thomas Denny (264295)
Alan Landay (296886)
Wendy Stevens (62288)
Vincent Habiyambere (523965)
Jos Perrins (523966)
Rosanna W. Peeling (146378)

February 2014

Intra- and inter-assay variation for the Versant kPCR (plasma) according to log copy number/mL of...

Intra- and inter-assay variation (% CV) for the Apogee Auto 40 and for the MBio SnapCount at thresholds <350 cells/mL and >350 cells/mL.

Rosanna W. Peeling (146378)
Kimberly A. Sollis (319691)
Sarah Glover (479589)
Suzanne M. Crowe (220340)
Alan L. Landay (231177)
Ben Cheng (379595)
David Barnett (367464)
Thomas N. Denny (140264)
Thomas J. Spira (705849)
Wendy S. Stevens (144114)
Siobhan Crowley (183853)
Shaffiq Essajee (363292)
Marco Vitoria (183846)
Nathan Ford (59436)

March 2015

Intra- and inter-assay variation (% CV) for the Apogee Auto 40 and for the MBio SnapCount at thre...

Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments

Maes, Evelyne
Valkenborg, Dirk
Baggerman, Geert
Willems, Hanny
Landuyt, Bart
Schoofs, Liliane
Mertens, Inge

March 2015

In quantitative shotgun proteomic analyses by liquid chromatography and mass spectrometry, a rigid s...

LC/MS/MS peptide transition ions, optimized collision energy and standard curve correlation coefficients.

Juan Carlos Q. Velez (648300)
Michael G. Janech (648301)
Megan P. Hicks (648302)
Thomas A. Morinelli (648303)
Jessalyn Rodgers (648304)
Sally E. Self (648305)
John M. Arthur (648306)
Wayne R. Fitzgibbon (648307)

October 2014

On column limit of detection (LOD), On column lower limit of quantification (LLOQ) and concentrat...

Plasma proteome profiles comparisons.

Marinus F. W. te Pas (218642)
Sietse-Jan Koopmans (461828)
Leo Kruijt (461829)
Mario P. L. Calus (461830)
Mari A. Smits (167528)

September 2013

Number of protein peaks for each of the protein arrays showing differential expression between th...

Average intra-assay concentration of peptide ITWDPPSSPVK and peptide ASAHAITGPPTELITSEVTAR of type XIV collagen.

Rieko Goto (770622)
Yasushi Nakamura (208049)
Tomonori Takami (124563)
Tokio Sanke (770623)
Zenzaburo Tozuka (770624)

July 2015

Peptides from each subject (subjects 1–6: non metastasis, subjects 7–18: massive lymph node metas...

Variance component analysis of a multi-site study for the reproducibility of multiple reaction monitoring measurements of peptides in human plasma.

Jessie Q Xia
Nell Sedransk
Xingdong Feng

January 2011

In the Addona et al. paper (Nature Biotechnology 2009), a large-scale multi-site study was performed...

Identification of differentially expressed proteins in plasma from control, cirrhosis and HCC subjects by label-free quantitative MS.

Haddy K. S. Fye (439577)
Cynthia Wright-Drakesmith (439578)
Holger B. Kramer (221354)
Suzi Camey (439579)
Andre Nogueira da Costa (320345)
Adam Jeng (439580)
Alasana Bah (439581)
Gregory D. Kirk (199129)
Mohamed I. F. Sharif (439582)
Nimzing G. Ladep (439583)
Edith Okeke (439584)
Pierre Hainaut (15065)
Simon D. Taylor-Robinson (316045)
Benedikt M. Kessler (216861)
Maimuna E. Mendy (439585)

July 2013

(A–D) Sequence coverage levels for differentially expressed proteins identified and select...

Variance Component Analysis of a Multi-Site Study for the Reproducibility of Multiple Reaction Monitoring Measurements of Peptides in Human Plasma

Xia Jessie Q.
Sedransk Nell
Feng Xingdong

January 2011

paper (Nature Biotechnology 2009), a large-scale multi-site study was performed to quantify Multipl...

Identification of HHV-6B targets of the IFN-γ response.

Aniuska Becerra-Artiles (829447)
Omar Dominguez-Amorocho (829448)
Lawrence J. Stern (49046)
J. Mauricio Calvo-Calle (80390)

November 2015

A. Schematic of the experimental approach: fractionation of proteins by SDS-PAGE; measurement of ...

Validation of the intra and inter-individual analysis by western blotting.

Elsa Kichine (477988)
Marcos Di Falco (477989)
Barbara F. Hales (111931)
Bernard Robaire (339292)
Peter Chan (477990)

October 2013

The coefficient of variation of four proteins with various dispersion levels was calculated by we...

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based CCP3 test, regarding peptide biomarker selection.

Cristina García-Moreno (6659672)
María José Gómara (6659675)
María José Bleda (6659678)
Raimon Sanmartí (368935)
Isabel Haro (2148178)

May 2019

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based C...

Quantitation of plasma protein concentrations by HI3, QconCAT and immunoassay.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

(a) Intra-assay variation of apolipoproteins by HI3 and QconCAT on a single day of measurements. ...

Hi3 peptide quantitative analysis of abundant plasma proteins.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

Median (ng/mL): median of protein concentrations determined from number of samples shown i...

HI3 peptide quantitation with a single protein digest standard and digest standard comparison.

Gertjan Kramer (635910)
Yvonne Woolerton (191411)
Jan P. van Straalen (557956)
Johannes P. C. Vissers (191412)
Nick Dekker (814950)
James I. Langridge (191415)
Robert J. Beynon (191418)
Dave Speijer (369493)
Auguste Sturk (814951)
Johannes M. F. G. Aerts (128594)

October 2015

(a) Summed signal intensity of the protein digest standard ENO1 (grey square) and ADH1 (dark grey...

Intra- and inter-assay variation for the Versant kPCR (plasma) according to log copy number/mL of sample (data extracted from references [39], [50]).

Kimberly A. Sollis (319691)
Pieter W. Smit (458975)
Susan Fiscus (243736)
Nathan Ford (59436)
Marco Vitoria (183846)
Shaffiq Essajee (363292)
David Barnett (367464)
Ben Cheng (379595)
Suzanne M. Crowe (220340)
Thomas Denny (264295)
Alan Landay (296886)
Wendy Stevens (62288)
Vincent Habiyambere (523965)
Jos Perrins (523966)
Rosanna W. Peeling (146378)

February 2014

Intra- and inter-assay variation for the Versant kPCR (plasma) according to log copy number/mL of...

Intra- and inter-assay variation (% CV) for the Apogee Auto 40 and for the MBio SnapCount at thresholds <350 cells/mL and >350 cells/mL.

Rosanna W. Peeling (146378)
Kimberly A. Sollis (319691)
Sarah Glover (479589)
Suzanne M. Crowe (220340)
Alan L. Landay (231177)
Ben Cheng (379595)
David Barnett (367464)
Thomas N. Denny (140264)
Thomas J. Spira (705849)
Wendy S. Stevens (144114)
Siobhan Crowley (183853)
Shaffiq Essajee (363292)
Marco Vitoria (183846)
Nathan Ford (59436)

March 2015

Intra- and inter-assay variation (% CV) for the Apogee Auto 40 and for the MBio SnapCount at thre...

Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments

Maes, Evelyne
Valkenborg, Dirk
Baggerman, Geert
Willems, Hanny
Landuyt, Bart
Schoofs, Liliane
Mertens, Inge

March 2015

In quantitative shotgun proteomic analyses by liquid chromatography and mass spectrometry, a rigid s...

LC/MS/MS peptide transition ions, optimized collision energy and standard curve correlation coefficients.

Juan Carlos Q. Velez (648300)
Michael G. Janech (648301)
Megan P. Hicks (648302)
Thomas A. Morinelli (648303)
Jessalyn Rodgers (648304)
Sally E. Self (648305)
John M. Arthur (648306)
Wayne R. Fitzgibbon (648307)

October 2014

On column limit of detection (LOD), On column lower limit of quantification (LLOQ) and concentrat...

Plasma proteome profiles comparisons.

Marinus F. W. te Pas (218642)
Sietse-Jan Koopmans (461828)
Leo Kruijt (461829)
Mario P. L. Calus (461830)
Mari A. Smits (167528)

September 2013

Number of protein peaks for each of the protein arrays showing differential expression between th...

Average intra-assay concentration of peptide ITWDPPSSPVK and peptide ASAHAITGPPTELITSEVTAR of type XIV collagen.

Rieko Goto (770622)
Yasushi Nakamura (208049)
Tomonori Takami (124563)
Tokio Sanke (770623)
Zenzaburo Tozuka (770624)

July 2015

Peptides from each subject (subjects 1–6: non metastasis, subjects 7–18: massive lymph node metas...

Variance component analysis of a multi-site study for the reproducibility of multiple reaction monitoring measurements of peptides in human plasma.

Jessie Q Xia
Nell Sedransk
Xingdong Feng

January 2011

In the Addona et al. paper (Nature Biotechnology 2009), a large-scale multi-site study was performed...

Identification of differentially expressed proteins in plasma from control, cirrhosis and HCC subjects by label-free quantitative MS.

Haddy K. S. Fye (439577)
Cynthia Wright-Drakesmith (439578)
Holger B. Kramer (221354)
Suzi Camey (439579)
Andre Nogueira da Costa (320345)
Adam Jeng (439580)
Alasana Bah (439581)
Gregory D. Kirk (199129)
Mohamed I. F. Sharif (439582)
Nimzing G. Ladep (439583)
Edith Okeke (439584)
Pierre Hainaut (15065)
Simon D. Taylor-Robinson (316045)
Benedikt M. Kessler (216861)
Maimuna E. Mendy (439585)

July 2013

(A–D) Sequence coverage levels for differentially expressed proteins identified and select...

Variance Component Analysis of a Multi-Site Study for the Reproducibility of Multiple Reaction Monitoring Measurements of Peptides in Human Plasma

Xia Jessie Q.
Sedransk Nell
Feng Xingdong

January 2011

paper (Nature Biotechnology 2009), a large-scale multi-site study was performed to quantify Multipl...

Identification of HHV-6B targets of the IFN-γ response.

Aniuska Becerra-Artiles (829447)
Omar Dominguez-Amorocho (829448)
Lawrence J. Stern (49046)
J. Mauricio Calvo-Calle (80390)

November 2015

A. Schematic of the experimental approach: fractionation of proteins by SDS-PAGE; measurement of ...

Validation of the intra and inter-individual analysis by western blotting.

Elsa Kichine (477988)
Marcos Di Falco (477989)
Barbara F. Hales (111931)
Bernard Robaire (339292)
Peter Chan (477990)

October 2013

The coefficient of variation of four proteins with various dispersion levels was calculated by we...

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based CCP3 test, regarding peptide biomarker selection.

Cristina García-Moreno (6659672)
María José Gómara (6659675)
María José Bleda (6659678)
Raimon Sanmartí (368935)
Isabel Haro (2148178)

May 2019

Sensitivity and specificity analysis of the multiplex assay compared to the commercial ELISA-based C...

Intra-assay variation comparison of Hi3 peptide quantitation to targeted proteomics studies of plasma proteins.

Abstract

Extracted data

Intra-assay variation comparison of Hi3 peptide quantitation to targeted proteomics studies of plasma proteins.

Abstract

Extracted data

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