<p>(A) Unconstrained tree, transition series unordered. (B) Constrained tree, transition series unordered. (C) Unconstrained tree, transition series ordered. (D) Constrained tree, transition series ordered. Numbers at nodes are bootstrap values. Symbol: “C”, node constrained based on results of Bayesian analyses. Capital letters following species designations refer to geographical localities (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0140280#pone.0140280.t002" target="_blank">Table 2</a>). Color refer to different evolutionary clades in our concatenated gene tree in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0140280#pone.0140280.g001" target="_blank">Fig 1</a>.</p
<p>Strict consensus of 10000 trees, length 210. Numbers beneath nodes are Bremer support indices. Da...
<p>For <i>mtMutS</i>, the effect of indels on phylogeny inference was tested by removing them with G...
<p>A, result of the first analysis, where all aquatic adaptations were considered ad hoc as homologi...
<p>The depicted tree structure resulted from an MP analysis on the unweighted data set with binary c...
<p>The bootstrap values were shown above the lines, and the Bayesian posterior probabilities were sh...
<p>In this analysis, relationships between taxa with molecular data (living taxa and moa) were const...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
<p>Bootstrap support for clades derived from each analysis contributing to the consensus is depicted...
<p>The first number at each node represents bootstrap support according to the Maximum Likelihood an...
<p>Monophyletic genera with more than one species are collapsed into a single branch. Groups of taxa...
<p>Posterior probabilities (PP; left number) and bootstraps from maximum likelihood (ML) analysis (B...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
<p>Strict consensus of 10000 trees, length 210.. Numbers beneath nodes are Bremer support indices. D...
<p>Majority rule consensus tree for Bayesian inference of phylogeographic relationships among mitoch...
<p>Strict consensus of 10000 trees, length 210. Numbers beneath nodes are Bremer support indices. Da...
<p>For <i>mtMutS</i>, the effect of indels on phylogeny inference was tested by removing them with G...
<p>A, result of the first analysis, where all aquatic adaptations were considered ad hoc as homologi...
<p>The depicted tree structure resulted from an MP analysis on the unweighted data set with binary c...
<p>The bootstrap values were shown above the lines, and the Bayesian posterior probabilities were sh...
<p>In this analysis, relationships between taxa with molecular data (living taxa and moa) were const...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
<p>Bootstrap support for clades derived from each analysis contributing to the consensus is depicted...
<p>The first number at each node represents bootstrap support according to the Maximum Likelihood an...
<p>Monophyletic genera with more than one species are collapsed into a single branch. Groups of taxa...
<p>Posterior probabilities (PP; left number) and bootstraps from maximum likelihood (ML) analysis (B...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
Consensus trees are required to summarise trees obtained through MCMC sampling of a posterior distri...
<p>Strict consensus of 10000 trees, length 210.. Numbers beneath nodes are Bremer support indices. D...
<p>Majority rule consensus tree for Bayesian inference of phylogeographic relationships among mitoch...
<p>Strict consensus of 10000 trees, length 210. Numbers beneath nodes are Bremer support indices. Da...
<p>For <i>mtMutS</i>, the effect of indels on phylogeny inference was tested by removing them with G...
<p>A, result of the first analysis, where all aquatic adaptations were considered ad hoc as homologi...