Additional file 2: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Additional file 6: Figure S17. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of brown lineage plastid genomes based on MUMmerplot. Figure S18. Structural c...

Additional file 6: of The plastid and mitochondrial genomes of Eucalyptus grandis

Desre Pinard (6332429)
Alexander Myburg (3438098)
Eshchar Mizrachi (2547937)

February 2019

Figure S3. Multiple whole genome alignment of selected land plant mitochondrial genomes. Alignment w...

Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Bart van de Vossenberg (438558)
BalĂĄzs Brankovics (5734778)
Hai Nguyen (211062)
Marga van Gent-Pelzer (5734760)
Donna Smith (2685370)
Kasia Dadej (5734763)
JarosĹaw Przetakiewicz (5734781)
Jan Kreuze (5734769)
Margriet Boerma (5734772)
Gerard van Leeuwen (5734775)
C. AndrĂŠ LĂŠvesque (5734784)
Theo van der Lee (3429437)

September 2018

Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny T...

Additional file 4: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain PL0501b, GenBank KR026340. Drawn b...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 3: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain AL0403MN, GenBank KR026339. Drawn ...

Additional file 6: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Alignment. Sequence alignment of individual mitochondrial genes in .nexus file format. (TXT 205 kb

Additional file 1: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S1. Overview of cryptophyte mitochondrial genomes. Linearized maps of the five novel complete...

Additional file 2: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S2. Hairpin structures wih palindromic sequence in cryptophyte mitochondrial genomes. The non...

Additional file 7: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Alignment for Badger, including only genes present in 1 copy and are present in all included taxa (p...

Additional file 4: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S4. Conservation of ribosomal protein gene organization. Gene order found in cryptophyte mito...

Additional file 2: of Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

Eiichi Shoguchi (700088)
Girish Beedessee (178828)
Ipputa Tada (3840019)
Kanako Hisata (3456587)
Takeshi Kawashima (3456581)
Takeshi Takeuchi (2814376)
Nana Arakaki (5393330)
Manabu Fujie (3456578)
Ryo Koyanagi (3456599)
Michael Roy (3521462)
Masanobu Kawachi (492757)
Michio Hidaka (5393333)
Noriyuki Satoh (765940)
Chuya Shinzato (60715)

June 2018

Figure S1. A screen shot of scaffold 314 on the SymA genome browser, which is accessible via http://...

Additional file 1: of Multimodular type I polyketide synthases in algae evolve by module duplications and displacement of AT domains in trans

Ekaterina Shelest (615653)
Natalie Heimerl (3514430)
Maximilian Fichtner (1419139)
Severin Sasso (680773)

November 2015

Table S1. Overview of available algal genome sequences. Table S3. Overview of conserved amino acid m...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 6: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...

Additional file 6: Figure S17. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of brown lineage plastid genomes based on MUMmerplot. Figure S18. Structural c...

Additional file 6: of The plastid and mitochondrial genomes of Eucalyptus grandis

Desre Pinard (6332429)
Alexander Myburg (3438098)
Eshchar Mizrachi (2547937)

February 2019

Figure S3. Multiple whole genome alignment of selected land plant mitochondrial genomes. Alignment w...

Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Bart van de Vossenberg (438558)
BalĂĄzs Brankovics (5734778)
Hai Nguyen (211062)
Marga van Gent-Pelzer (5734760)
Donna Smith (2685370)
Kasia Dadej (5734763)
JarosĹaw Przetakiewicz (5734781)
Jan Kreuze (5734769)
Margriet Boerma (5734772)
Gerard van Leeuwen (5734775)
C. AndrĂŠ LĂŠvesque (5734784)
Theo van der Lee (3429437)

September 2018

Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny T...

Additional file 4: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain PL0501b, GenBank KR026340. Drawn b...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 3: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Pediastrum duplex strain AL0403MN, GenBank KR026339. Drawn ...

Additional file 6: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Alignment. Sequence alignment of individual mitochondrial genes in .nexus file format. (TXT 205 kb

Additional file 1: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S1. Overview of cryptophyte mitochondrial genomes. Linearized maps of the five novel complete...

Additional file 2: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S2. Hairpin structures wih palindromic sequence in cryptophyte mitochondrial genomes. The non...

Additional file 7: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Alignment for Badger, including only genes present in 1 copy and are present in all included taxa (p...

Additional file 4: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S4. Conservation of ribosomal protein gene organization. Gene order found in cryptophyte mito...

Additional file 2: of Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

Eiichi Shoguchi (700088)
Girish Beedessee (178828)
Ipputa Tada (3840019)
Kanako Hisata (3456587)
Takeshi Kawashima (3456581)
Takeshi Takeuchi (2814376)
Nana Arakaki (5393330)
Manabu Fujie (3456578)
Ryo Koyanagi (3456599)
Michael Roy (3521462)
Masanobu Kawachi (492757)
Michio Hidaka (5393333)
Noriyuki Satoh (765940)
Chuya Shinzato (60715)

June 2018

Figure S1. A screen shot of scaffold 314 on the SymA genome browser, which is accessible via http://...

Additional file 1: of Multimodular type I polyketide synthases in algae evolve by module duplications and displacement of AT domains in trans

Ekaterina Shelest (615653)
Natalie Heimerl (3514430)
Maximilian Fichtner (1419139)
Severin Sasso (680773)

November 2015

Table S1. Overview of available algal genome sequences. Table S3. Overview of conserved amino acid m...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 6: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S6. Phylogenetic trees inferred from single genes. The trees were constructed using amino aci...

Additional file 6: Figure S17. of Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

JunMo Lee (3493265)
Chung Cho (3493274)
Seung Park (3427022)
Ji Choi (3405368)
Hyun Song (3493271)
John West (2950008)
Debashish Bhattacharya (35009)
Hwan Yoon (3493268)

September 2016

Structural comparison of brown lineage plastid genomes based on MUMmerplot. Figure S18. Structural c...

Additional file 6: of The plastid and mitochondrial genomes of Eucalyptus grandis

Desre Pinard (6332429)
Alexander Myburg (3438098)
Eshchar Mizrachi (2547937)

February 2019

Figure S3. Multiple whole genome alignment of selected land plant mitochondrial genomes. Alignment w...

Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Bart van de Vossenberg (438558)
BalĂĄzs Brankovics (5734778)
Hai Nguyen (211062)
Marga van Gent-Pelzer (5734760)
Donna Smith (2685370)
Kasia Dadej (5734763)
JarosĹaw Przetakiewicz (5734781)
Jan Kreuze (5734769)
Margriet Boerma (5734772)
Gerard van Leeuwen (5734775)
C. AndrĂŠ LĂŠvesque (5734784)
Theo van der Lee (3429437)

September 2018

Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny T...

Additional file 2: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Abstract

Extracted data

Additional file 2: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Abstract

Extracted data

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