Additional file 1: Table S1. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Additional file 1: of Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza

Lin Zhang (8926)
Yusuke Nakagomi (6056009)
Takashi Endo (19218)
Mika Teranishi (6056012)
Jun Hidema (6056015)
Shusei Sato (103969)
Atsushi Higashitani (350427)

December 2018

Figure S1. Selection and identification of Pi54 alleles using primer set Pi54 MAS. Figure S2. Alignm...

Additional file 7: Figure S3. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

The relative water content of ZH11 seeds during imbibition in solutions containing various PEG conce...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 5: Figure S1. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Predicted conserved domains in OSCAs of Oryza sativa L. ssp. Japonica, Oryza sativa L. ssp. Indica, ...

Additional file 3: Table S3. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Microarray data of OsOSCA expression patterns during panicle growth and caryopsis development in ric...

Additional file 9: Figure S5. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Expression of marker genes in roots of four-leaf-stage rice in the presence of osmotic-related abiot...

Additional file 4: Table S4. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

The relative expression of three housekeeping genes: actin, eEF1a and UBQ5 at different abiotic-rela...

Additional file 8: Figure S4. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Circadian rhythmic expression of the marker gene OsLHY in four-leaf-stage ZH11 seedlings. (DOC 56 kb

Additional file 1: of DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling

X. Liu (589632)
C. Yang (3924488)
R. Miao (5599979)
C. Zhou (3979253)
P. Cao (5599982)
J. Lan (5599985)
X. Zhu (1590766)
C. Mou (5599988)
Y. Huang (698750)
S. Liu (1394419)
Y. Tian (2247169)
T. Nguyen (810516)
L. Jiang (42921)
J. Wan (5599991)

August 2018

Table S1 Comparison of agronomic traits between WT and ds1. Table S2 Primers used in mapping. Table ...

Additional file 1: Figure S1. of Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice

Joung Kim (3950501)
Songhwa Chae (532817)
Kyong Jun (3950495)
Yoon-Mok Pahk (3950498)
Tae-Ho Lee (177564)
Pil Chung (3567242)
Yeon-Ki Kim (532824)
Baek Nahm (3950492)

April 2017

Transcript levels of Wsi18, OsSMF1, and OsREM from 300 K Rice Genome Microarray ( www.ggbio.com ). T...

Additional file 1: of Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases

Margarida Rosa (6080672)
Diego Almeida (6080678)
Inês Pires (4227616)
Daniel da Rosa Farias (6080687)
Alice Martins (1714189)
Luciano da Maia (6080690)
António de Oliveira (6080705)
Nelson Saibo (6080696)
M. Oliveira (4227622)
Isabel Abreu (6080699)

December 2018

Table S1. List of cis-acting elements of the rice SUMOylation machinery genes and respective descrip...

Additional file 10: of Multiple areas investigation reveals the genes related to vascular bundles in rice

Cheng Fei (6496997)
Xin Geng (571200)
Zhengjin Xu (4783467)
Quan Xu (554774)

March 2019

Figure S5. The number of LVBs between control and ABA treatment plants, and the expression level of ...

Additional file 1: of Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.)

Xiaoming Yang (113295)
Yulong Ren (381103)
Yue Cai (335454)
Mei Niu (5541977)
Zhiming Feng (3707974)
Ruonan Jing (5541980)
Changling Mou (5541974)
Xi Liu (142824)
Lianjie Xiao (748105)
Xin Zhang (35492)
Fuqing Wu (4248673)
Xiuping Guo (381107)
Ling Jiang (172296)
Jianmin Wan (821353)

July 2018

Figure S1. Characterization of ‘Dongjin’ (WT) and lgs1 plants. Figure S2. Identification of transcri...

Additional file 7: Table S6. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

Direct target genes of OsNAC5, 6, 9, and 10 identified by merging of chromatin immunoprecipitation (...

Additional file 2 Table S3. of Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

Weihua Qiao (119099)
Lan Qi (3566423)
Zhijun Cheng (381109)
Long Su (3566417)
Jing Li (10611)
Yan Sun (22436)
Junfang Ren (3566420)
Xiaoming Zheng (1265265)
Qingwen Yang (119119)

August 2016

QTLs for ten agronomic traits detected in 198 CSSLs at Nanjing and Sanya sites. Table S1: Sequence i...

Additional file 1: of Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza

Lin Zhang (8926)
Yusuke Nakagomi (6056009)
Takashi Endo (19218)
Mika Teranishi (6056012)
Jun Hidema (6056015)
Shusei Sato (103969)
Atsushi Higashitani (350427)

December 2018

Figure S1. Selection and identification of Pi54 alleles using primer set Pi54 MAS. Figure S2. Alignm...

Additional file 7: Figure S3. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

The relative water content of ZH11 seeds during imbibition in solutions containing various PEG conce...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 5: Figure S1. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Predicted conserved domains in OSCAs of Oryza sativa L. ssp. Japonica, Oryza sativa L. ssp. Indica, ...

Additional file 3: Table S3. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Microarray data of OsOSCA expression patterns during panicle growth and caryopsis development in ric...

Additional file 9: Figure S5. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Expression of marker genes in roots of four-leaf-stage rice in the presence of osmotic-related abiot...

Additional file 4: Table S4. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

The relative expression of three housekeeping genes: actin, eEF1a and UBQ5 at different abiotic-rela...

Additional file 8: Figure S4. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

Circadian rhythmic expression of the marker gene OsLHY in four-leaf-stage ZH11 seedlings. (DOC 56 kb

Additional file 1: of DS1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling

X. Liu (589632)
C. Yang (3924488)
R. Miao (5599979)
C. Zhou (3979253)
P. Cao (5599982)
J. Lan (5599985)
X. Zhu (1590766)
C. Mou (5599988)
Y. Huang (698750)
S. Liu (1394419)
Y. Tian (2247169)
T. Nguyen (810516)
L. Jiang (42921)
J. Wan (5599991)

August 2018

Table S1 Comparison of agronomic traits between WT and ds1. Table S2 Primers used in mapping. Table ...

Additional file 1: Figure S1. of Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice

Joung Kim (3950501)
Songhwa Chae (532817)
Kyong Jun (3950495)
Yoon-Mok Pahk (3950498)
Tae-Ho Lee (177564)
Pil Chung (3567242)
Yeon-Ki Kim (532824)
Baek Nahm (3950492)

April 2017

Transcript levels of Wsi18, OsSMF1, and OsREM from 300 K Rice Genome Microarray ( www.ggbio.com ). T...

Additional file 1: of Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases

Margarida Rosa (6080672)
Diego Almeida (6080678)
Inês Pires (4227616)
Daniel da Rosa Farias (6080687)
Alice Martins (1714189)
Luciano da Maia (6080690)
António de Oliveira (6080705)
Nelson Saibo (6080696)
M. Oliveira (4227622)
Isabel Abreu (6080699)

December 2018

Table S1. List of cis-acting elements of the rice SUMOylation machinery genes and respective descrip...

Additional file 10: of Multiple areas investigation reveals the genes related to vascular bundles in rice

Cheng Fei (6496997)
Xin Geng (571200)
Zhengjin Xu (4783467)
Quan Xu (554774)

March 2019

Figure S5. The number of LVBs between control and ABA treatment plants, and the expression level of ...

Additional file 1: of Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.)

Xiaoming Yang (113295)
Yulong Ren (381103)
Yue Cai (335454)
Mei Niu (5541977)
Zhiming Feng (3707974)
Ruonan Jing (5541980)
Changling Mou (5541974)
Xi Liu (142824)
Lianjie Xiao (748105)
Xin Zhang (35492)
Fuqing Wu (4248673)
Xiuping Guo (381107)
Ling Jiang (172296)
Jianmin Wan (821353)

July 2018

Figure S1. Characterization of ‘Dongjin’ (WT) and lgs1 plants. Figure S2. Identification of transcri...

Additional file 7: Table S6. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

Direct target genes of OsNAC5, 6, 9, and 10 identified by merging of chromatin immunoprecipitation (...

Additional file 2 Table S3. of Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311

Weihua Qiao (119099)
Lan Qi (3566423)
Zhijun Cheng (381109)
Long Su (3566417)
Jing Li (10611)
Yan Sun (22436)
Junfang Ren (3566420)
Xiaoming Zheng (1265265)
Qingwen Yang (119119)

August 2016

QTLs for ten agronomic traits detected in 198 CSSLs at Nanjing and Sanya sites. Table S1: Sequence i...

Additional file 1: of Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza

Lin Zhang (8926)
Yusuke Nakagomi (6056009)
Takashi Endo (19218)
Mika Teranishi (6056012)
Jun Hidema (6056015)
Shusei Sato (103969)
Atsushi Higashitani (350427)

December 2018

Figure S1. Selection and identification of Pi54 alleles using primer set Pi54 MAS. Figure S2. Alignm...

Additional file 7: Figure S3. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Yunshuang Li (3470810)
Fang Yuan (96264)
Zhaohong Wen (3470807)
Yihao Li (3167853)
Fang Wang (105926)
Tao Zhu (118644)
Wenqing Zhuo (3470813)
Xi Jin (174296)
Yingdian Wang (175407)
Heping Zhao (671708)
Zhen-Ming Pei (416862)
Shengcheng Han (3167847)

October 2015

The relative water content of ZH11 seeds during imbibition in solutions containing various PEG conce...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 1: Table S1. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Abstract

Extracted data

Additional file 1: Table S1. of Genome-wide survey and expression analysis of the OSCA gene family in rice

Abstract

Extracted data

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