DEG analysis of P. tomentosa a: DEGs in PIP vs. HP up-regulated and down-regulated in PIP-60 vs. PIP. b: DEGs in PIP vs. HP down-regulated and up-regulated in PIP-60 vs. PIP. (TIF 39.7 kb
Table S1. Summary statistics of ChIP-Seq for H3K4me3, H3K36me3 and H3K9ac in Paulownia (DOCX 14 kb
Figure S2. Pathway analysis of genes differentially modified by both DNA methylation and H3K4me3 (a)...
Table S6. List of genes involved in phenylpropanoid biosynthesis from ChIP-Seq analysis (XLSX 20 kb
Length distribution of P. tomentosa small RNAs obtained by high-throughput sequencing in PIP-60 libr...
KEGG pathway analysis of the P. tomentosa DEGs a: the number of the differentially expressed unigene...
Overview of the transcriptome sequencing and assembly of P. tomentosa. (DOCX 29.3 kb
Similarity statistic of the all-unigenes *: the number of all-unigenes that satisfied the correspond...
Correlation coefficients of the gene expression of duplicate samples. Y-axis represents the logarith...
Identified targets of miRNA involved in Paulownia by miRNA and degradome analysis. (XLSX 35.2 kb
Hairpin structures of P. tometosa miRNAs Pau-mR1a-i have the same mature miRNA sequence; pau-mR3a/b ...
Length distribution of P. tomentosa small RNAs obtained by high-throughput sequencing in HP librarie...
Species statistic of the all-unigenes *: the number of all-unigenes that hit these species and obtai...
Figure S3. Pathway analysis of genes differentially targeted by both miRNAs and H3K4me3 (a), H3K36me...
Figure S1. Pathway analysis of differentially (a) H3K4me3-, (b) H3K36me3- and (c) H3K9ac-modified ge...
Table S5. List of genes involved in plant hormone signal transduction from ChIP-Seq analysis (XLSX 2...
Table S1. Summary statistics of ChIP-Seq for H3K4me3, H3K36me3 and H3K9ac in Paulownia (DOCX 14 kb
Figure S2. Pathway analysis of genes differentially modified by both DNA methylation and H3K4me3 (a)...
Table S6. List of genes involved in phenylpropanoid biosynthesis from ChIP-Seq analysis (XLSX 20 kb
Length distribution of P. tomentosa small RNAs obtained by high-throughput sequencing in PIP-60 libr...
KEGG pathway analysis of the P. tomentosa DEGs a: the number of the differentially expressed unigene...
Overview of the transcriptome sequencing and assembly of P. tomentosa. (DOCX 29.3 kb
Similarity statistic of the all-unigenes *: the number of all-unigenes that satisfied the correspond...
Correlation coefficients of the gene expression of duplicate samples. Y-axis represents the logarith...
Identified targets of miRNA involved in Paulownia by miRNA and degradome analysis. (XLSX 35.2 kb
Hairpin structures of P. tometosa miRNAs Pau-mR1a-i have the same mature miRNA sequence; pau-mR3a/b ...
Length distribution of P. tomentosa small RNAs obtained by high-throughput sequencing in HP librarie...
Species statistic of the all-unigenes *: the number of all-unigenes that hit these species and obtai...
Figure S3. Pathway analysis of genes differentially targeted by both miRNAs and H3K4me3 (a), H3K36me...
Figure S1. Pathway analysis of differentially (a) H3K4me3-, (b) H3K36me3- and (c) H3K9ac-modified ge...
Table S5. List of genes involved in plant hormone signal transduction from ChIP-Seq analysis (XLSX 2...
Table S1. Summary statistics of ChIP-Seq for H3K4me3, H3K36me3 and H3K9ac in Paulownia (DOCX 14 kb
Figure S2. Pathway analysis of genes differentially modified by both DNA methylation and H3K4me3 (a)...
Table S6. List of genes involved in phenylpropanoid biosynthesis from ChIP-Seq analysis (XLSX 20 kb
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