Results of spatial analysis of genetic structure, using BAPS: A—assignment of specimens to four genetic clusters indicated by spatial clustering; B—admixture analysis of identified clusters.

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the programs BAPS under mixture of groups of populations model (A), admixture model (B) and spatial model (C) for K = 16, and STRUCTURE assuming correlated frequencies and admixed origin of populations for K = 18 (D) and K = 16 (E).

Natalia Rosetti (146495)
Maria Isabel Remis (146497)

July 2012

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the...

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B).

Mary E. Blair (142850)
Don J. Melnick (142855)

August 2012

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B). Vertical lines ar...

Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of Lucanus cervus and (B) the microsatellite genotypes.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

The pie charts represent the distribution of BAPS clusters, given in different colours, and are scal...

STRUCTURE results: A—estimated likelihoods, ln P(D), of each number of inferred genetic clusters (bars are SD—only given when exceeding the width of dots); B—the corresponding ΔK curves as a function of K; C—ancestry of individuals, estimated for K = 2 and 3 (based on ΔK), and 6 (based on estimated likelihoods).

Robert Rutkowski (822738)
Miha Krofel (676042)
Giorgos Giannatos (822739)
Duško Ćirović (822740)
Peep Männil (131165)
Anatoliy M. Volokh (822741)
József Lanszki (822742)
Miklós Heltai (822743)
László Szabó (524954)
Ovidiu C. Banea (822744)
Eduard Yavruyan (822745)
Vahram Hayrapetyan (548838)
Natia Kopaliani (548840)
Anastasia Miliou (822746)
George A. Tryfonopoulos (822747)
Petros Lymberakis (546304)
Aleksandra Penezić (822748)
Giedrė Pakeltytė (822749)
Ewa Suchecka (822750)
Wiesław Bogdanowicz (107956)

November 2015

SEE—south-eastern Europe; CAU—Caucasus; BAL—Baltics; GRE-P—Greece, Peloponnese; GRE-S—Greece, Sam...

Letter Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Lu Cheng
Thomas R. Connor
David M. Aanensen
Jukka Cor

August 2016

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Hierarchical and spatially explicit clustering of DNA sequences with BAPS software

Cheng, Lu
Connor, Thomas Richard
Siren, J.
Aanensen, D. M.
Corander, J.

May 2013

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Temporal and spatial population genetic structure.

Ke Bi (196347)
Tyler Linderoth (3293478)
Sonal Singhal (3255189)
Dan Vanderpool (3194157)
James L. Patton (285876)
Rasmus Nielsen (16017)
Craig Moritz (33597)
Jeffrey M. Good (215573)

May 2019

(A) Genetic clustering by general sampling locality (left, pie charts) and individual (bar graph to ...

Bayesian cluster analysis of 40 global B. germanica populations as identified by the program BAPS.

Edward L. Vargo (253173)
Jonathan R. Crissman (597543)
Warren Booth (253172)
Richard G. Santangelo (597544)
Dmitry V. Mukha (597545)
Coby Schal (55795)

July 2014

Populations given the same color were grouped into the same genetic cluster. The analysis identif...

BAPS analysis - Bromelia balansae

Bárbara Simões Santos Leal (5470004)
Lilian Ricco Medeiros (5470895)
Elen Arroyo Peres (4415539)
Thadeu Sobral-Souza (719639)
Clarisse Palma-Silva (3243273)
Gustavo Quevedo Romero (524808)
Claudia Maria A. Carareto (5470892)

June 2018

Input files to perform a population genetic structure analysis using the "spatial clustering of indi...

Genetic clusters and individuals’ ancestry as inferred from Bayesian clustering with STRUCTURE based on SNPs.

Fei Mi (459578)
Ying Zhang (1235337)
Dan Yang (65758)
Xiaozhao Tang (459580)
Pengfei Wang (123133)
Xiaoxia He (459582)
Yunrun Zhang (2147638)
Jianyong Dong (333209)
Yang Cao (53545)
Chunli Liu (459579)
Ke-Qin Zhang (75410)
Jianping Xu (163726)

February 2016

The x-axis represents geographic locations where the isolates were collected. The y-axis represen...

Genetic clusters obtained from the Structure analysis (n = 189).

Kathrin A. Witzenberger (622119)
Axel Hochkirch (180357)

August 2014

Each individual is represented by a single vertical line, divided into K colours. The coloured se...

Spatial clustering analysis in Geneland.

Eva Graciá (778549)
Joaquín Ortego (778550)
José Antonio Godoy (205966)
Juan Manuel Pérez-García (778551)
Guillermo Blanco (38294)
María del Mar Delgado (254381)
Vincenzo Penteriani (254379)
Irene Almodóvar (778552)
Francisco Botella (778553)
José Antonio Sánchez-Zapata (778554)

July 2015

The number of inferred clusters was fixed to three, as this represents the most supported value o...

Bayesian clustering algorithms ascertaining spatial population structure: A new computer program and a comparison study

Chen, Chibiao
Durand, Eric
Forbes, Florence
Francois, Olivier

September 2007

International audienceOn the basis of simulated data, this study compares the relative performances ...

Geographic clines of BAPS clusters' proportions.

Alexandra Sá-Pinto (111976)
Madalena S. Branco (111977)
Paulo B. Alexandrino (111980)
Michaël C. Fontaine (111983)
Stuart J. E. Baird (111985)

December 2012

Average proportion of nuclear genome in each sampling location assigned to one of the clusters re...

BAPS_files

Hyseni, Chaz
Garrick, Ryan C.

April 2019

Input files for BAPS analyses, including a file that shows the mtDNA COI+COII locus haplotypes for e...

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the programs BAPS under mixture of groups of populations model (A), admixture model (B) and spatial model (C) for K = 16, and STRUCTURE assuming correlated frequencies and admixed origin of populations for K = 18 (D) and K = 16 (E).

Natalia Rosetti (146495)
Maria Isabel Remis (146497)

July 2012

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the...

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B).

Mary E. Blair (142850)
Don J. Melnick (142855)

August 2012

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B). Vertical lines ar...

Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of Lucanus cervus and (B) the microsatellite genotypes.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

The pie charts represent the distribution of BAPS clusters, given in different colours, and are scal...

STRUCTURE results: A—estimated likelihoods, ln P(D), of each number of inferred genetic clusters (bars are SD—only given when exceeding the width of dots); B—the corresponding ΔK curves as a function of K; C—ancestry of individuals, estimated for K = 2 and 3 (based on ΔK), and 6 (based on estimated likelihoods).

Robert Rutkowski (822738)
Miha Krofel (676042)
Giorgos Giannatos (822739)
Duško Ćirović (822740)
Peep Männil (131165)
Anatoliy M. Volokh (822741)
József Lanszki (822742)
Miklós Heltai (822743)
László Szabó (524954)
Ovidiu C. Banea (822744)
Eduard Yavruyan (822745)
Vahram Hayrapetyan (548838)
Natia Kopaliani (548840)
Anastasia Miliou (822746)
George A. Tryfonopoulos (822747)
Petros Lymberakis (546304)
Aleksandra Penezić (822748)
Giedrė Pakeltytė (822749)
Ewa Suchecka (822750)
Wiesław Bogdanowicz (107956)

November 2015

SEE—south-eastern Europe; CAU—Caucasus; BAL—Baltics; GRE-P—Greece, Peloponnese; GRE-S—Greece, Sam...

Letter Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Lu Cheng
Thomas R. Connor
David M. Aanensen
Jukka Cor

August 2016

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Hierarchical and spatially explicit clustering of DNA sequences with BAPS software

Cheng, Lu
Connor, Thomas Richard
Siren, J.
Aanensen, D. M.
Corander, J.

May 2013

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Temporal and spatial population genetic structure.

Ke Bi (196347)
Tyler Linderoth (3293478)
Sonal Singhal (3255189)
Dan Vanderpool (3194157)
James L. Patton (285876)
Rasmus Nielsen (16017)
Craig Moritz (33597)
Jeffrey M. Good (215573)

May 2019

(A) Genetic clustering by general sampling locality (left, pie charts) and individual (bar graph to ...

Bayesian cluster analysis of 40 global B. germanica populations as identified by the program BAPS.

Edward L. Vargo (253173)
Jonathan R. Crissman (597543)
Warren Booth (253172)
Richard G. Santangelo (597544)
Dmitry V. Mukha (597545)
Coby Schal (55795)

July 2014

Populations given the same color were grouped into the same genetic cluster. The analysis identif...

BAPS analysis - Bromelia balansae

Bárbara Simões Santos Leal (5470004)
Lilian Ricco Medeiros (5470895)
Elen Arroyo Peres (4415539)
Thadeu Sobral-Souza (719639)
Clarisse Palma-Silva (3243273)
Gustavo Quevedo Romero (524808)
Claudia Maria A. Carareto (5470892)

June 2018

Input files to perform a population genetic structure analysis using the "spatial clustering of indi...

Genetic clusters and individuals’ ancestry as inferred from Bayesian clustering with STRUCTURE based on SNPs.

Fei Mi (459578)
Ying Zhang (1235337)
Dan Yang (65758)
Xiaozhao Tang (459580)
Pengfei Wang (123133)
Xiaoxia He (459582)
Yunrun Zhang (2147638)
Jianyong Dong (333209)
Yang Cao (53545)
Chunli Liu (459579)
Ke-Qin Zhang (75410)
Jianping Xu (163726)

February 2016

The x-axis represents geographic locations where the isolates were collected. The y-axis represen...

Genetic clusters obtained from the Structure analysis (n = 189).

Kathrin A. Witzenberger (622119)
Axel Hochkirch (180357)

August 2014

Each individual is represented by a single vertical line, divided into K colours. The coloured se...

Spatial clustering analysis in Geneland.

Eva Graciá (778549)
Joaquín Ortego (778550)
José Antonio Godoy (205966)
Juan Manuel Pérez-García (778551)
Guillermo Blanco (38294)
María del Mar Delgado (254381)
Vincenzo Penteriani (254379)
Irene Almodóvar (778552)
Francisco Botella (778553)
José Antonio Sánchez-Zapata (778554)

July 2015

The number of inferred clusters was fixed to three, as this represents the most supported value o...

Bayesian clustering algorithms ascertaining spatial population structure: A new computer program and a comparison study

Chen, Chibiao
Durand, Eric
Forbes, Florence
Francois, Olivier

September 2007

International audienceOn the basis of simulated data, this study compares the relative performances ...

Geographic clines of BAPS clusters' proportions.

Alexandra Sá-Pinto (111976)
Madalena S. Branco (111977)
Paulo B. Alexandrino (111980)
Michaël C. Fontaine (111983)
Stuart J. E. Baird (111985)

December 2012

Average proportion of nuclear genome in each sampling location assigned to one of the clusters re...

BAPS_files

Hyseni, Chaz
Garrick, Ryan C.

April 2019

Input files for BAPS analyses, including a file that shows the mtDNA COI+COII locus haplotypes for e...

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the programs BAPS under mixture of groups of populations model (A), admixture model (B) and spatial model (C) for K = 16, and STRUCTURE assuming correlated frequencies and admixed origin of populations for K = 18 (D) and K = 16 (E).

Natalia Rosetti (146495)
Maria Isabel Remis (146497)

July 2012

Results of genetic assignment of individuals analysis based on Bayesian method implemented in the...

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B).

Mary E. Blair (142850)
Don J. Melnick (142855)

August 2012

Distribution of three genetic clusters estimated in STRUCTURE (A) and BAPS (B). Vertical lines ar...

Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of Lucanus cervus and (B) the microsatellite genotypes.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

The pie charts represent the distribution of BAPS clusters, given in different colours, and are scal...

Results of spatial analysis of genetic structure, using BAPS: A—assignment of specimens to four genetic clusters indicated by spatial clustering; B—admixture analysis of identified clusters.

Abstract

Extracted data

Results of spatial analysis of genetic structure, using BAPS: A—assignment of specimens to four genetic clusters indicated by spatial clustering; B—admixture analysis of identified clusters.

Abstract

Extracted data

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