Distribution of assembled transcripts based on abundance (FPKM) and corresponding read density. The x-axis represents abundance threshold (FPKM) and y-axis represents read density. The red and green lines represent the Gaussian Mixture Model that was applied to assembled transcripts. The abundance threshold (represented by vertical dotted line) separates transcripts identified as true positives on the right (supported by more reads) from those identified as potential false positives on the left (supported by less reads). The two screenshots taken from genome browser demonstrates examples of high read density and low read density. (PDF 226 kb
Additional file 1: Figure S1. Multidimensional scaling (MDS) of sequenced APC subpopulations. RNA s...
Plot of AEI ratio versus read depth across SNP. Displays the average magnitude of the allelic expres...
Supplemental Material contains the following data: Figure S1. Sorting strategy used to profile perip...
Correlation between miRNA read count, transcript, and protein abundance. (A) Protein abundance versu...
Data generated on naĂŻve CD4+ T cells and memory CD4+ T cells. Basic metrics assaying the quality of...
Correlation of methylation level at different gene features with transcript and protein expression l...
CD4 T cell subpopulations were separated with at least 90% purity. Dot plots showing the sequential ...
Quality control of single-cell RNA-seq analysis. (a) Cumulative gene diversity and gene-body coverag...
Confirmation of erythrocyte cell sorting and long RNA read distribution. A) Distribution of cell flu...
Figure S1. a–c The distribution of Tajima’s D for DNase footprint SNPs in each subpopulation. d Over...
Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...
Clustering heat map showing cellular heterogeneity in CD4+ and CD8+ T-cell subsets. Figure S1 shows ...
Molecular characteristics of identified subpopulations. a Left: QRT-PCR of GATA1 and GATA2 in K562 c...
Expression estimates of genes are consistent across two independent analysis pipelines. RNA-Seq expr...
A list of novel transcripts and novel spliced isoforms identified in naĂŻve CD4+ T cells. (XLSX 9927...
Additional file 1: Figure S1. Multidimensional scaling (MDS) of sequenced APC subpopulations. RNA s...
Plot of AEI ratio versus read depth across SNP. Displays the average magnitude of the allelic expres...
Supplemental Material contains the following data: Figure S1. Sorting strategy used to profile perip...
Correlation between miRNA read count, transcript, and protein abundance. (A) Protein abundance versu...
Data generated on naĂŻve CD4+ T cells and memory CD4+ T cells. Basic metrics assaying the quality of...
Correlation of methylation level at different gene features with transcript and protein expression l...
CD4 T cell subpopulations were separated with at least 90% purity. Dot plots showing the sequential ...
Quality control of single-cell RNA-seq analysis. (a) Cumulative gene diversity and gene-body coverag...
Confirmation of erythrocyte cell sorting and long RNA read distribution. A) Distribution of cell flu...
Figure S1. a–c The distribution of Tajima’s D for DNase footprint SNPs in each subpopulation. d Over...
Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...
Clustering heat map showing cellular heterogeneity in CD4+ and CD8+ T-cell subsets. Figure S1 shows ...
Molecular characteristics of identified subpopulations. a Left: QRT-PCR of GATA1 and GATA2 in K562 c...
Expression estimates of genes are consistent across two independent analysis pipelines. RNA-Seq expr...
A list of novel transcripts and novel spliced isoforms identified in naĂŻve CD4+ T cells. (XLSX 9927...
Additional file 1: Figure S1. Multidimensional scaling (MDS) of sequenced APC subpopulations. RNA s...
Plot of AEI ratio versus read depth across SNP. Displays the average magnitude of the allelic expres...
Supplemental Material contains the following data: Figure S1. Sorting strategy used to profile perip...