Pathways enriched from Gene Set Analysis of genes correlating with TCGA dataset 1 or dataset 2. (XLSX 12 kb
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Correlation of methylation level at different gene features with transcript and protein expression l...
Table S13. List of signaling pathways used in Additional file 1: Figure S7a. (XLSX 20 kb
A list of novel transcripts and novel spliced isoforms identified in naĂŻve CD4+ T cells. (XLSX 9927...
A list of uncharacterized proteins annotated as open reading frames in public databases that were id...
Proteogenomic pipeline. Custom protein databases that were used for searching tandem mass spectromet...
A list of annotated pseudogenes that encode proteins in naĂŻve CD4+ T cells with the corresponding p...
Data generated on naĂŻve CD4+ T cells and memory CD4+ T cells. Basic metrics assaying the quality of...
A list of known and novel signal peptide cleavage sites identified for membrane/secreted proteins ex...
Table S10. Identities of significant gene set overlap between TCGA breast cancer and METABRIC data. ...
Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...
Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...
Table S4. Pathscan analysis of receptors and pathways intrinsically activated in a panel of breast c...
Cell surface proteins of naĂŻve CD4+ T cells and their expression compared to resting memory CD4+ T ...
Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Correlation of methylation level at different gene features with transcript and protein expression l...
Table S13. List of signaling pathways used in Additional file 1: Figure S7a. (XLSX 20 kb
A list of novel transcripts and novel spliced isoforms identified in naĂŻve CD4+ T cells. (XLSX 9927...
A list of uncharacterized proteins annotated as open reading frames in public databases that were id...
Proteogenomic pipeline. Custom protein databases that were used for searching tandem mass spectromet...
A list of annotated pseudogenes that encode proteins in naĂŻve CD4+ T cells with the corresponding p...
Data generated on naĂŻve CD4+ T cells and memory CD4+ T cells. Basic metrics assaying the quality of...
A list of known and novel signal peptide cleavage sites identified for membrane/secreted proteins ex...
Table S10. Identities of significant gene set overlap between TCGA breast cancer and METABRIC data. ...
Table S11. Number of significant gene set overlap between TCGA breast cancer and METABRIC data and t...
Table S4. Dominant and combinatorial features of enrichment in 434 functional classes of TCGA breast...
Table S4. Pathscan analysis of receptors and pathways intrinsically activated in a panel of breast c...
Cell surface proteins of naĂŻve CD4+ T cells and their expression compared to resting memory CD4+ T ...
Example of a miRNA identified and the distribution of reads across a predicted hairpin structure. Pu...
GWAS information. Table S2. SMR results (P SMR <8.4 × 10–6). Table S3. SMR and HEIDI results (P HEID...
Correlation of methylation level at different gene features with transcript and protein expression l...
Table S13. List of signaling pathways used in Additional file 1: Figure S7a. (XLSX 20 kb