<p>Comparison between reactivities predicted by REEFFIT and mutants designed to stabilize the (a) TBWN-A, (b) TBWN-B, (c) TBWN-C structures are given below each state (arrows in the structures mark mutations); each plot shows the measured reactivates for each pair of mutants (orange and green) and predicted REEFFIT reactivates for the corresponding state (blue with error bars). (d) Determining FMN dissociation constants for stabilizing mutants of the TBWN-A, TBWN-B, and TBWN-C structures of the Tebowned FMN switch using the LIFFT HiTRACE toolkit (showing data for residue 15, see Supporting Fig I in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1004473#pcbi.1004473.s001" target="_blank">S1 Text</a>) are shown bel...
We introduce here for the first time the RNAMute package, a pattern-recognition-based utility to pe...
RNA structures are dynamic. As a consequence, mutational effects can be hard to rationalize with ref...
<p>(a) M<sup>2</sup> measurements in 0 and 5 mM adenine; (b) REEFFIT bootstrapped fits; (c) base pai...
<p>(a) M<i>2</i> data, (b) REEFFIT fit, and (c) inference of the M-stable structural landscape, show...
Landscapes exhibiting multiple secondary structures arise in natural RNA molecules that modulate gen...
<div><p>Landscapes exhibiting multiple secondary structures arise in natural RNA molecules that modu...
<p>(a) M<sup>2</sup> data, (b) REEFFIT fit, and (c) inference of the Tebowned structural landscape, ...
<p>(a) M<sup>2</sup> measurements for the MedLoop artificial sequence (given to REEFFIT as input); (...
Quantitative single nucleotide resolution RNA footprinting methods probe structural accessibility at...
The diversity and importance of the role played by RNAs in the regulation and development of the cel...
<p>(Top) The Astatistic (described in text) indicates the likelihood that a given phenotype will ari...
Ribonucleic acid, or RNA, is a cellular structure largely known for carrying instructions from DNA f...
<p>MFold Program was used to predict the stability of the secondary structure of TS:N20 RNA and the ...
For each mutant, regions of 107 nucleotides were assessed using Mfold (available on http://www.unafo...
The discovery of catalytic RNAs suggests that life emerged from an RNA molecule. However, the princi...
We introduce here for the first time the RNAMute package, a pattern-recognition-based utility to pe...
RNA structures are dynamic. As a consequence, mutational effects can be hard to rationalize with ref...
<p>(a) M<sup>2</sup> measurements in 0 and 5 mM adenine; (b) REEFFIT bootstrapped fits; (c) base pai...
<p>(a) M<i>2</i> data, (b) REEFFIT fit, and (c) inference of the M-stable structural landscape, show...
Landscapes exhibiting multiple secondary structures arise in natural RNA molecules that modulate gen...
<div><p>Landscapes exhibiting multiple secondary structures arise in natural RNA molecules that modu...
<p>(a) M<sup>2</sup> data, (b) REEFFIT fit, and (c) inference of the Tebowned structural landscape, ...
<p>(a) M<sup>2</sup> measurements for the MedLoop artificial sequence (given to REEFFIT as input); (...
Quantitative single nucleotide resolution RNA footprinting methods probe structural accessibility at...
The diversity and importance of the role played by RNAs in the regulation and development of the cel...
<p>(Top) The Astatistic (described in text) indicates the likelihood that a given phenotype will ari...
Ribonucleic acid, or RNA, is a cellular structure largely known for carrying instructions from DNA f...
<p>MFold Program was used to predict the stability of the secondary structure of TS:N20 RNA and the ...
For each mutant, regions of 107 nucleotides were assessed using Mfold (available on http://www.unafo...
The discovery of catalytic RNAs suggests that life emerged from an RNA molecule. However, the princi...
We introduce here for the first time the RNAMute package, a pattern-recognition-based utility to pe...
RNA structures are dynamic. As a consequence, mutational effects can be hard to rationalize with ref...
<p>(a) M<sup>2</sup> measurements in 0 and 5 mM adenine; (b) REEFFIT bootstrapped fits; (c) base pai...