Differential gene representation analysis results. Table of results of differential gene representation analysis (for gene set Afun1.2 and mitochondrial genes) contrasting Ribo-Zero and poly(A) enriched RNAseq libraries. The most over-represented genes in Ribo-Zero libraries are highlighted in red. The most over-represented genes in poly(A) libraries are highlighted in blue. The significance cutoff used was an FDR-adjusted (FDR = 5 %) P-value < 0.01. The tag counts for FANG-1 samples are the mean of two libraries (see main text). (XLSX 1784 kb
Quality control of RNA-seq data: Box Plot of transcript quantification levels. The distributions of ...
Genes (A-D) and gene sets (E-H) differentially expressed in the pfmdr1 data set. For each pairwise c...
Figure S1. Primer and probe design strategy using Detox (A), consisting of RPS7 (normaliser), CYP6P3...
Integration of transcriptome datasets. Table of sequence clusters (clustered at 95 % sequence identi...
Table S1. This table provides links to video examples of the Malpighian tubule dissections described...
dsRNA haemocyte-specific library. The main features of target genes and dsRNAs used in this study ar...
Alignment of polymorphic positions in GNBP2 after exclusion of all gaps (indels). Dots indicate iden...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Confirmation of the RNA sequencing expression profiling by qRT-PCR using the same RNA samples. Nine ...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Figure S1. Clusters composed of members from a single species or six species. a) Clusters comprise P...
Ribosome profiling data. Jensen - data from [20]; Silicotryp - data from [16] and this paper. All nu...
Table S1. List of genes with different detected transcript levels between 3D7 and D10 strains by abs...
Quality control of RNA-seq data: Box Plot of transcript quantification levels. The distributions of ...
Genes (A-D) and gene sets (E-H) differentially expressed in the pfmdr1 data set. For each pairwise c...
Figure S1. Primer and probe design strategy using Detox (A), consisting of RPS7 (normaliser), CYP6P3...
Integration of transcriptome datasets. Table of sequence clusters (clustered at 95 % sequence identi...
Table S1. This table provides links to video examples of the Malpighian tubule dissections described...
dsRNA haemocyte-specific library. The main features of target genes and dsRNAs used in this study ar...
Alignment of polymorphic positions in GNBP2 after exclusion of all gaps (indels). Dots indicate iden...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Confirmation of the RNA sequencing expression profiling by qRT-PCR using the same RNA samples. Nine ...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Figure S1. Clusters composed of members from a single species or six species. a) Clusters comprise P...
Ribosome profiling data. Jensen - data from [20]; Silicotryp - data from [16] and this paper. All nu...
Table S1. List of genes with different detected transcript levels between 3D7 and D10 strains by abs...
Quality control of RNA-seq data: Box Plot of transcript quantification levels. The distributions of ...
Genes (A-D) and gene sets (E-H) differentially expressed in the pfmdr1 data set. For each pairwise c...
Figure S1. Primer and probe design strategy using Detox (A), consisting of RPS7 (normaliser), CYP6P3...