Predictive power of repeat elements accuracy based on genomic location of 1k, 5k, 100k from the DMR.

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.

Shiori Yabe (3172620)
Hiroe Yoshida (702559)
Hiromi Kajiya-Kanegae (5993417)
Masanori Yamasaki (755934)
Hiroyoshi Iwata (487190)
Kaworu Ebana (177939)
Takeshi Hayashi (36389)
Hiroshi Nakagawa (269927)

November 2018

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.</p

Many repeat types are enriched among DUX4 binding sites.

Janet M. Young (79201)
Jennifer L. Whiddon (488099)
Zizhen Yao (48910)
Bhavatharini Kasinathan (488100)
Lauren Snider (360240)
Linda N. Geng (360242)
Judit Balog (262070)
Rabi Tawil (169550)
Silvère M. van der Maarel (1389870)
Stephen J. Tapscott (269326)

November 2013

(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...

Percent of the genome identified as repetitive elements by RepeatMasker.

Daren C. Card (626284)
Drew R. Schield (626285)
Jacobo Reyes-Velasco (626286)
Matthew K. Fujita (123478)
Audra L. Andrew (626287)
Sara J. Oyler-McCance (184490)
Jennifer A. Fike (184495)
Diana F. Tomback (161663)
Robert P. Ruggiero (615498)
Todd A. Castoe (184476)

September 2014

Histograms of percent repetitive content for all assemblies and the reference genomes of both spe...

Predictive power of specific features.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) Groups of features with their predictive power (percent accuracy) for the DHVPP dataset. (B) ...

Genomic chromosome locations of predicted DMR and overlap between germ cell and somatic cell predicted sites.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) Germ cell DHVPP and somatic cell SG predicted number of (+3) sites in each chromosome. (B) Ge...

CpG density plot showing number of predicted DMR sites correlated with CpG density.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) CpG density from the potential predicted germ cell DMR sites (3,234) when DHVPP is used as th...

Prediction of duplicates as signal based on peak enrichment.

Shulan Tian (386639)
Shuxia Peng (6551339)
Michael Kalmbach (3402848)
Krutika S. Gaonkar (6551342)
Aditya Bhagwate (488828)
Wei Ding (690)
Jeanette Eckel-Passow (3423125)
Huihuang Yan (269118)
Susan L. Slager (223846)

April 2019

(A) Duplicate rate in a library and in peaks and proportion of duplicates in peaks. Duplicate rate i...

Repeats of shorter unit length are more difficult to sequence.

John W. Fondon III (145820)
Andy Martin (329828)
Stephen Richards (1495)
Richard A. Gibbs (94141)
David Mittelman (329829)

February 2013

The plotted values are the mean (A) completeness (fraction of repeats with at least two reads pas...

Prediction accuracy on randomly chosen genes.

Jianhua Ruan (84974)

February 2013

(a) Gene-profile accuracy as a function of . (b) Gene-profile accuracy for each time point.</p

The mappability score of the reference sequence and its correction, of a trial instance.

Rituparna Sinha (785383)
Sandip Samaddar (785384)
Rajat K. De (242513)

August 2015

(a). The mappability score varies widely in [0, 1], corresponding to high to low repeat rich regi...

Frequency of DMRs’ distances to closest Transcription Start Site and DMRs location distribution regarding genes and CpG islands.

José A. Carrillo (757240)
Yanghua He (155475)
Juan Luo (149338)
Kimberly R. Menendez (545269)
Nathaniel L. Tablante (378239)
Keji Zhao (149346)
Joseph N. Paulson (760136)
Bichun Li (446931)
Jiuzhou Song (41834)

June 2015

a) The distance from the transcription start site is represented in base pairs from the 0 in the ...

The effect of the number of sequence features used on the overall prediction accuracies for the two datasets 25PDB and D8244.

Xia-Yu Xia (156977)
Meng Ge (156979)
Zhi-Xin Wang (156984)
Xian-Ming Pan (40954)

June 2012

The effect of the number of sequence features used on the overall prediction accuracies for the t...

Comparison of prediction accuracy on four multiclass classification datasets by varying the number of top selected genes.

Bo Liao (287406)
Yan Jiang (12139)
Guanqun Yuan (614115)
Wen Zhu (149702)
Lijun Cai (533984)
Zhi Cao (614116)

August 2014

Comparison of prediction accuracy on four multiclass classification datasets by varying the numbe...

Average accuracy, AUC, sensitivity and specificity across different number of AHP genes in the DLBCL dataset.

Thanh Nguyen (253964)
Abbas Khosravi (714566)
Douglas Creighton (714567)
Saeid Nahavandi (714568)

March 2015

Average accuracy, AUC, sensitivity and specificity across different number of AHP genes in the DL...

Performance of genotype data with varying levels of similarity.

Brian D. Bennett (136440)
Qing Xiong (136442)
Sayan Mukherjee (43870)
Terrence S. Furey (136444)

September 2012

Percentage of correct predictions with standard error for the genotype data using single-task, mu...

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.

Shiori Yabe (3172620)
Hiroe Yoshida (702559)
Hiromi Kajiya-Kanegae (5993417)
Masanori Yamasaki (755934)
Hiroyoshi Iwata (487190)
Kaworu Ebana (177939)
Takeshi Hayashi (36389)
Hiroshi Nakagawa (269927)

November 2018

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.</p

Many repeat types are enriched among DUX4 binding sites.

Janet M. Young (79201)
Jennifer L. Whiddon (488099)
Zizhen Yao (48910)
Bhavatharini Kasinathan (488100)
Lauren Snider (360240)
Linda N. Geng (360242)
Judit Balog (262070)
Rabi Tawil (169550)
Silvère M. van der Maarel (1389870)
Stephen J. Tapscott (269326)

November 2013

(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...

Percent of the genome identified as repetitive elements by RepeatMasker.

Daren C. Card (626284)
Drew R. Schield (626285)
Jacobo Reyes-Velasco (626286)
Matthew K. Fujita (123478)
Audra L. Andrew (626287)
Sara J. Oyler-McCance (184490)
Jennifer A. Fike (184495)
Diana F. Tomback (161663)
Robert P. Ruggiero (615498)
Todd A. Castoe (184476)

September 2014

Histograms of percent repetitive content for all assemblies and the reference genomes of both spe...

Predictive power of specific features.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) Groups of features with their predictive power (percent accuracy) for the DHVPP dataset. (B) ...

Genomic chromosome locations of predicted DMR and overlap between germ cell and somatic cell predicted sites.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) Germ cell DHVPP and somatic cell SG predicted number of (+3) sites in each chromosome. (B) Ge...

CpG density plot showing number of predicted DMR sites correlated with CpG density.

M. Muksitul Haque (603976)
Lawrence B. Holder (827061)
Michael K. Skinner (131798)

November 2015

(A) CpG density from the potential predicted germ cell DMR sites (3,234) when DHVPP is used as th...

Prediction of duplicates as signal based on peak enrichment.

Shulan Tian (386639)
Shuxia Peng (6551339)
Michael Kalmbach (3402848)
Krutika S. Gaonkar (6551342)
Aditya Bhagwate (488828)
Wei Ding (690)
Jeanette Eckel-Passow (3423125)
Huihuang Yan (269118)
Susan L. Slager (223846)

April 2019

(A) Duplicate rate in a library and in peaks and proportion of duplicates in peaks. Duplicate rate i...

Repeats of shorter unit length are more difficult to sequence.

John W. Fondon III (145820)
Andy Martin (329828)
Stephen Richards (1495)
Richard A. Gibbs (94141)
David Mittelman (329829)

February 2013

The plotted values are the mean (A) completeness (fraction of repeats with at least two reads pas...

Prediction accuracy on randomly chosen genes.

Jianhua Ruan (84974)

February 2013

(a) Gene-profile accuracy as a function of . (b) Gene-profile accuracy for each time point.</p

The mappability score of the reference sequence and its correction, of a trial instance.

Rituparna Sinha (785383)
Sandip Samaddar (785384)
Rajat K. De (242513)

August 2015

(a). The mappability score varies widely in [0, 1], corresponding to high to low repeat rich regi...

Frequency of DMRs’ distances to closest Transcription Start Site and DMRs location distribution regarding genes and CpG islands.

José A. Carrillo (757240)
Yanghua He (155475)
Juan Luo (149338)
Kimberly R. Menendez (545269)
Nathaniel L. Tablante (378239)
Keji Zhao (149346)
Joseph N. Paulson (760136)
Bichun Li (446931)
Jiuzhou Song (41834)

June 2015

a) The distance from the transcription start site is represented in base pairs from the 0 in the ...

The effect of the number of sequence features used on the overall prediction accuracies for the two datasets 25PDB and D8244.

Xia-Yu Xia (156977)
Meng Ge (156979)
Zhi-Xin Wang (156984)
Xian-Ming Pan (40954)

June 2012

The effect of the number of sequence features used on the overall prediction accuracies for the t...

Comparison of prediction accuracy on four multiclass classification datasets by varying the number of top selected genes.

Bo Liao (287406)
Yan Jiang (12139)
Guanqun Yuan (614115)
Wen Zhu (149702)
Lijun Cai (533984)
Zhi Cao (614116)

August 2014

Comparison of prediction accuracy on four multiclass classification datasets by varying the numbe...

Average accuracy, AUC, sensitivity and specificity across different number of AHP genes in the DLBCL dataset.

Thanh Nguyen (253964)
Abbas Khosravi (714566)
Douglas Creighton (714567)
Saeid Nahavandi (714568)

March 2015

Average accuracy, AUC, sensitivity and specificity across different number of AHP genes in the DL...

Performance of genotype data with varying levels of similarity.

Brian D. Bennett (136440)
Qing Xiong (136442)
Sayan Mukherjee (43870)
Terrence S. Furey (136444)

September 2012

Percentage of correct predictions with standard error for the genotype data using single-task, mu...

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.

Shiori Yabe (3172620)
Hiroe Yoshida (702559)
Hiromi Kajiya-Kanegae (5993417)
Masanori Yamasaki (755934)
Hiroyoshi Iwata (487190)
Kaworu Ebana (177939)
Takeshi Hayashi (36389)
Hiroshi Nakagawa (269927)

November 2018

PRESS and prediction accuracy (Q2) for the grain weight distribution in genomic prediction.</p

Many repeat types are enriched among DUX4 binding sites.

Janet M. Young (79201)
Jennifer L. Whiddon (488099)
Zizhen Yao (48910)
Bhavatharini Kasinathan (488100)
Lauren Snider (360240)
Linda N. Geng (360242)
Judit Balog (262070)
Rabi Tawil (169550)
Silvère M. van der Maarel (1389870)
Stephen J. Tapscott (269326)

November 2013

(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...

Percent of the genome identified as repetitive elements by RepeatMasker.

Daren C. Card (626284)
Drew R. Schield (626285)
Jacobo Reyes-Velasco (626286)
Matthew K. Fujita (123478)
Audra L. Andrew (626287)
Sara J. Oyler-McCance (184490)
Jennifer A. Fike (184495)
Diana F. Tomback (161663)
Robert P. Ruggiero (615498)
Todd A. Castoe (184476)

September 2014

Histograms of percent repetitive content for all assemblies and the reference genomes of both spe...

Predictive power of repeat elements accuracy based on genomic location of 1k, 5k, 100k from the DMR.

Abstract

Extracted data

Predictive power of repeat elements accuracy based on genomic location of 1k, 5k, 100k from the DMR.

Abstract

Extracted data

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