Additional file 6: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Additional file 2 of Single nucleotide polymorphism genes and mitochondrial DNA haplogroups as biomarkers for early prediction of knee osteoarthritis structural progressors: use of supervised machine learning classifiers

Hossein Bonakdari (13773708)
Jean-Pierre Pelletier (918)
Francisco J. Blanco (22726)
Ignacio Rego-Pérez (140742)
Alejandro Durán-Sotuela (13773711)
Dawn Aitken (3448724)
Graeme Jones (15001)
Flavia Cicuttini (3448730)
Afshin Jamshidi (8940161)
François Abram (84277)
Johanne Martel-Pelletier (12614157)

September 2022

Additional file 2: Fig. S2. Association and frequency of mtDNA haplogroups and clusters in the studi...

Additional file 1: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Table S1. Quality assessment of eligible studies (Newcastle-Ottawa Scale). Table S2. Definitions of ...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 3: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Primers used for the cloning of the seven SNPs within the association interval for their analysis by...

Additional file 1: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Details of the patients studied in this report for A) qPCR analysis and B) RNA sequencing analysis. ...

Additional file 2: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

The 21 MCF2L protein coding transcript isoforms listed by Ensembl and analysed as part of Fig.Â 1 . ...

Additional file 5: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

An eQTL that regulates MCF2L gene expression in skeletal muscle and oesophagus muscularis. A search ...

Additional file 4: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

The seven transcript SNPs and their pair-wise Dâ and r 2 values relative to rs9350591

Additional file 10: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Diagram to explain the premise of allelic expression imbalance analysis when there are no transcript...

Additional file 2: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Table of patient characteristics and their genotype at rs9350591 used in gene expression and allelic...

Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Allelic expression imbalance analysis stratified by disease state and joint site. (PDF 57 kb

Additional file 3: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

n numbers used for real-time reverse transcription PCR (qPCR) and allelic expression imbalance (AEI)

A variant in MCF2L is associated with osteoarthritis.

Day-Williams, Aaron G
Southam, Lorraine
Panoutsopoulou, Kalliope
Rayner, Nigel W
Esko, Tonu
Estrada, Karol
Helgadottir, Hafdis T
Hofman, Albert
Ingvarsson, Throvaldur
Jonsson, Helgi
Keis, Aime
Kerkhof, Hanneke J M
Thorleifsson, Gudmar
Arden, Nigel K
Carr, Andrew
Chapman, Kay
Deloukas, Panos
Loughlin, John
McCaskie, Andrew
Ollier, William E R
Ralston, Stuart H
Spector, Timothy D
Wallis, Gillian A
Wilkinson, J Mark
Aslam, Nadim
Birell, Fraser
Carluke, Ian
Joseph, John
Rai, Ashok
Reed, Mike
Walker, Kirsten
Doherty, Sally A
Jonsdottir, Ingileif
Maciewicz, Rose A
Muir, Kenneth R
Metspalu, Andres
Rivadeneira, Fernando
Stefansson, Kari
Styrkarsdottir, Unnur
Uitterlinden, Andre G
van Meurs, Joyce B J
Zhang, Weiya
Valdes, Ana M
Doherty, Michael
Zeggini, Eleftheria

May 2012

To access publisher full text version of this article. Please click on the hyperlink in Additional L...

Additional file 1 of Single nucleotide polymorphism genes and mitochondrial DNA haplogroups as biomarkers for early prediction of knee osteoarthritis structural progressors: use of supervised machine learning classifiers

Hossein Bonakdari (13773708)
Jean-Pierre Pelletier (918)
Francisco J. Blanco (22726)
Ignacio Rego-Pérez (140742)
Alejandro Durán-Sotuela (13773711)
Dawn Aitken (3448724)
Graeme Jones (15001)
Flavia Cicuttini (3448730)
Afshin Jamshidi (8940161)
François Abram (84277)
Johanne Martel-Pelletier (12614157)

September 2022

Additional file 1: Fig. S1. Frequency of single nucleotide polymorphism (SNP) genes in the studied p...

Additional file 2: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Figure S2. Funnel plot for GDF5 polymorphism in musculoskeletal degenerative diseases. Figure S3. Be...

Additional file 2 of Single nucleotide polymorphism genes and mitochondrial DNA haplogroups as biomarkers for early prediction of knee osteoarthritis structural progressors: use of supervised machine learning classifiers

Hossein Bonakdari (13773708)
Jean-Pierre Pelletier (918)
Francisco J. Blanco (22726)
Ignacio Rego-Pérez (140742)
Alejandro Durán-Sotuela (13773711)
Dawn Aitken (3448724)
Graeme Jones (15001)
Flavia Cicuttini (3448730)
Afshin Jamshidi (8940161)
François Abram (84277)
Johanne Martel-Pelletier (12614157)

September 2022

Additional file 2: Fig. S2. Association and frequency of mtDNA haplogroups and clusters in the studi...

Additional file 1: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Table S1. Quality assessment of eligible studies (Newcastle-Ottawa Scale). Table S2. Definitions of ...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 3: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Primers used for the cloning of the seven SNPs within the association interval for their analysis by...

Additional file 1: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

Details of the patients studied in this report for A) qPCR analysis and B) RNA sequencing analysis. ...

Additional file 2: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

The 21 MCF2L protein coding transcript isoforms listed by Ensembl and analysed as part of Fig.Â 1 . ...

Additional file 5: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Colin Shepherd (728920)
Andrew Skelton (2137075)
Michael Rushton (2993094)
Louise Reynard (15712)
John Loughlin (427542)

November 2015

An eQTL that regulates MCF2L gene expression in skeletal muscle and oesophagus muscularis. A search ...

Additional file 4: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

The seven transcript SNPs and their pair-wise Dâ and r 2 values relative to rs9350591

Additional file 10: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Diagram to explain the premise of allelic expression imbalance analysis when there are no transcript...

Additional file 2: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Table of patient characteristics and their genotype at rs9350591 used in gene expression and allelic...

Additional file 11: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

Allelic expression imbalance analysis stratified by disease state and joint site. (PDF 57 kb

Additional file 3: of Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591

Katherine Johnson (3587309)
Louise Reynard (15712)
John Loughlin (427542)

September 2015

n numbers used for real-time reverse transcription PCR (qPCR) and allelic expression imbalance (AEI)

A variant in MCF2L is associated with osteoarthritis.

Day-Williams, Aaron G
Southam, Lorraine
Panoutsopoulou, Kalliope
Rayner, Nigel W
Esko, Tonu
Estrada, Karol
Helgadottir, Hafdis T
Hofman, Albert
Ingvarsson, Throvaldur
Jonsson, Helgi
Keis, Aime
Kerkhof, Hanneke J M
Thorleifsson, Gudmar
Arden, Nigel K
Carr, Andrew
Chapman, Kay
Deloukas, Panos
Loughlin, John
McCaskie, Andrew
Ollier, William E R
Ralston, Stuart H
Spector, Timothy D
Wallis, Gillian A
Wilkinson, J Mark
Aslam, Nadim
Birell, Fraser
Carluke, Ian
Joseph, John
Rai, Ashok
Reed, Mike
Walker, Kirsten
Doherty, Sally A
Jonsdottir, Ingileif
Maciewicz, Rose A
Muir, Kenneth R
Metspalu, Andres
Rivadeneira, Fernando
Stefansson, Kari
Styrkarsdottir, Unnur
Uitterlinden, Andre G
van Meurs, Joyce B J
Zhang, Weiya
Valdes, Ana M
Doherty, Michael
Zeggini, Eleftheria

May 2012

To access publisher full text version of this article. Please click on the hyperlink in Additional L...

Additional file 1 of Single nucleotide polymorphism genes and mitochondrial DNA haplogroups as biomarkers for early prediction of knee osteoarthritis structural progressors: use of supervised machine learning classifiers

Hossein Bonakdari (13773708)
Jean-Pierre Pelletier (918)
Francisco J. Blanco (22726)
Ignacio Rego-Pérez (140742)
Alejandro Durán-Sotuela (13773711)
Dawn Aitken (3448724)
Graeme Jones (15001)
Flavia Cicuttini (3448730)
Afshin Jamshidi (8940161)
François Abram (84277)
Johanne Martel-Pelletier (12614157)

September 2022

Additional file 1: Fig. S1. Frequency of single nucleotide polymorphism (SNP) genes in the studied p...

Additional file 2: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Figure S2. Funnel plot for GDF5 polymorphism in musculoskeletal degenerative diseases. Figure S3. Be...

Additional file 2 of Single nucleotide polymorphism genes and mitochondrial DNA haplogroups as biomarkers for early prediction of knee osteoarthritis structural progressors: use of supervised machine learning classifiers

Hossein Bonakdari (13773708)
Jean-Pierre Pelletier (918)
Francisco J. Blanco (22726)
Ignacio Rego-Pérez (140742)
Alejandro Durán-Sotuela (13773711)
Dawn Aitken (3448724)
Graeme Jones (15001)
Flavia Cicuttini (3448730)
Afshin Jamshidi (8940161)
François Abram (84277)
Johanne Martel-Pelletier (12614157)

September 2022

Additional file 2: Fig. S2. Association and frequency of mtDNA haplogroups and clusters in the studi...

Additional file 1: of Association between GDF5 rs143383 genetic polymorphism and musculoskeletal degenerative diseases susceptibility: a meta-analysis

Xin Huang (11077)
Weiyue Zhang (5750204)
Zengwu Shao (4097731)

September 2018

Table S1. Quality assessment of eligible studies (Newcastle-Ottawa Scale). Table S2. Definitions of ...

Additional file 1: Table S1. of Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis

Erfan Aref-Eshghi (567518)
Yuhua Zhang (57349)
Ming Liu (105953)
Patricia Harper (3447827)
Glynn Martin (567521)
Andrew Furey (567520)
Roger Green (148824)
Guang Sun (305123)
Proton Rahman (192262)
Guangju Zhai (110167)

October 2015

CpG sites differentially methylated in knee/hip OA compared to healthy cartilage*. Table 2. The gene...

Additional file 6: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Abstract

Extracted data

Additional file 6: of Expression analysis of the osteoarthritis genetic susceptibility locus mapping to an intron of the MCF2L gene and marked by the polymorphism rs11842874

Abstract

Extracted data

Related items

Related items