Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in UTRs of targeted genes, according to each enrichment method.

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necessary to achieve approximately 1X coverage across all genomes present in cultured and uncultured samples.

Andrea R. Ottesen (456164)
Antonio Gonzalez (2150521)
Rebecca Bell (456165)
Caroline Arce (456166)
Steven Rideout (456167)
Marc Allard (281187)
Peter Evans (456168)
Errol Strain (278122)
Steven Musser (456169)
Rob Knight (11635)
Eric Brown (281186)
James B. Pettengill (456170)

September 2013

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necess...

Percentage of genes with only H3K4me3, or only H3K27me3 or both H3K4me3 and H3K27me3 enrichment in the chicken genome for each group.

Juan Luo (149338)
Apratim Mitra (130263)
Fei Tian (41830)
Shuang Chang (149341)
Huanmin Zhang (41829)
Kairong Cui (149344)
Ying Yu (7066)
Keji Zhao (149346)
Jiuzhou Song (41834)

July 2012

When there is an overlap of the H3K4me3 island with the TSS of a gene, it was defined as the H3K4...

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.

Xifeng Ren (409727)
Eviatar Nevo (55671)
Dongfa Sun (198916)
Genlou Sun (198908)

May 2013

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.</p

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in coding regions of targeted genes (with 10 bp of intronic flanking regions), according to each enrichment method.

Julien Philippe (164769)
Mehdi Derhourhi (829429)
Emmanuelle Durand (76789)
Emmanuel Vaillant (164763)
Aurélie Dechaume (179474)
Iandry Rabearivelo (829430)
Véronique Dhennin (829431)
Martine Vaxillaire (164818)
Franck De Graeve (91108)
Olivier Sand (81219)
Philippe Froguel (2247)
Amélie Bonnefond (179465)

November 2015

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in coding regions of targeted...

The percentage of target base pairs with at least 1x or 20x coverage for each replicated sample.

Yuan Qi (71013)
Xiuping Liu (149206)
Chang-gong Liu (5664232)
Bailing Wang (764488)
Kenneth R. Hess (764489)
W. Fraser Symmans (118635)
Weiwei Shi (139867)
Lajos Pusztai (78763)

July 2015

R1 = sequencing experiment 1, R2 = sequencing experiment 2, R3 = sequencing experiment 3.T...

Global silencing efficiency for each target gene.

Odile Filhol (124715)
Delphine Ciais (124722)
Christian Lajaunie (124727)
Peggy Charbonnier (124730)
Nicolas Foveau (124733)
Jean-Philippe Vert (124736)
Yves Vandenbrouck (72588)

October 2012

siRNA efficiency ratio represents the number of siRNA with >70% silencing activity over the total...

Base pairs and percentage of region covered on the Sequence Capture arrays.

Eva C. Verbeek (321979)
Marianna R. Bevova (321981)
Zoltán Bochdanovits (39582)
Patrizia Rizzu (260324)
Ingrid M. C. Bakker (321980)
Tiny Uithuisje (488601)
Eco J. De Geus (5656927)
Johannes H. Smit (321982)
Brenda W. Penninx (238627)
Dorret I. Boomsma (109746)
Witte J. G. Hoogendijk (321983)
Peter Heutink (39587)

November 2013

Base pairs and percentage of region covered on the Sequence Capture arrays.</p

Sequencing coverage of each gene.

Xinzhong Li (430872)
Andrew J. Buckton (430873)
Samuel L. Wilkinson (430874)
Shibu John (430875)
Roddy Walsh (430876)
Tomas Novotny (430877)
Iveta Valaskova (430878)
Manu Gupta (73376)
Laurence Game (47015)
Paul J R. Barton (430879)
Stuart A. Cook (227271)
James S. Ware (430880)

July 2013

The coverage of the protein-coding sequence of each gene of interest is tabulated, as a percentag...

The enrichment of the 155 selected target genes and the 162 selected between genes on OncoDB.HCC genes.

Tao Huang (110613)
Junjie Wang (172690)
Yu-Dong Cai (133116)
Hanry Yu (172694)
Kuo-Chen Chou (117713)

April 2012

The enrichment of the 155 selected target genes and the 162 selected between genes on OncoDB.HCC ...

Selected genes, their function and the number of tag SNPs required to reach 100% coverage at m.a.f.>0.1 and r2>0.8.

Eva C. Verbeek (321979)
Ingrid M. C. Bakker (321980)
Marianna R. Bevova (321981)
Zoltán Bochdanovits (39582)
Patrizia Rizzu (260324)
David Sondervan (39583)
Gonneke Willemsen (75573)
Eco J. de Geus (179549)
Johannes H. Smit (321982)
Brenda W. Penninx (238627)
Dorret I. Boomsma (109746)
Witte J. G. Hoogendijk (321983)
Peter Heutink (39587)

February 2013

Selected genes, their function and the number of tag SNPs required to reach 100% coverage at m.a....

Distribution of genes′ coverage in the two ovine libraries.

Han Ying Chen (705760)
Hong Shen (166278)
Bin Jia (372751)
Yong Sheng Zhang (705761)
Xu Hai Wang (705762)
Xian Cun Zeng (705763)

March 2015

Gene coverage is the percentage of a gene covered by reads. This value is equal to the ratio of t...

Numbers of genes with defined sequence coverage in each cultivar.

Yuko Arai-Kichise (512007)
Yuh Shiwa (512008)
Kaworu Ebana (177939)
Mari Shibata-Hatta (512009)
Hirofumi Yoshikawa (231503)
Masahiro Yano (177951)
Kyo Wakasa (512010)

January 2014

Sequence coverage indicating the percentage of coding sequences covered by short-reads.</p

Number of UTRs (ntotal = 197) exhaustively covered by 8, 20, 50 or 100 sequence reads, according to each enrichment method.

Julien Philippe (164769)
Mehdi Derhourhi (829429)
Emmanuelle Durand (76789)
Emmanuel Vaillant (164763)
Aurélie Dechaume (179474)
Iandry Rabearivelo (829430)
Véronique Dhennin (829431)
Martine Vaxillaire (164818)
Franck De Graeve (91108)
Olivier Sand (81219)
Philippe Froguel (2247)
Amélie Bonnefond (179465)

November 2015

Number of UTRs (ntotal = 197) exhaustively covered by 8, 20, 50 or 100 s...

Primer sequences and expected product size (bp) for the target and reference genes. Primer efficiency was >1.89, respectively.

Nada Charbaji (312006)
Monika Schäfer-Korting (312007)
Sarah Küchler (312008)

February 2013

Primer sequences and expected product size (bp) for the target and reference genes. Primer effici...

Percent of coverage representing the percentage of genes which expressed in each of the three stages mapped in the rice genome.

Hong Xu (71477)
Yi Gao (112914)
Jianbo Wang (184708)

February 2012

R1, 3–5 DAP; R2, 7 DAP; R3, 14 DAP. Gene coverage is the percentage of a gene covered by reads. T...

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necessary to achieve approximately 1X coverage across all genomes present in cultured and uncultured samples.

Andrea R. Ottesen (456164)
Antonio Gonzalez (2150521)
Rebecca Bell (456165)
Caroline Arce (456166)
Steven Rideout (456167)
Marc Allard (281187)
Peter Evans (456168)
Errol Strain (278122)
Steven Musser (456169)
Rob Knight (11635)
Eric Brown (281186)
James B. Pettengill (456170)

September 2013

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necess...

Percentage of genes with only H3K4me3, or only H3K27me3 or both H3K4me3 and H3K27me3 enrichment in the chicken genome for each group.

Juan Luo (149338)
Apratim Mitra (130263)
Fei Tian (41830)
Shuang Chang (149341)
Huanmin Zhang (41829)
Kairong Cui (149344)
Ying Yu (7066)
Keji Zhao (149346)
Jiuzhou Song (41834)

July 2012

When there is an overlap of the H3K4me3 island with the TSS of a gene, it was defined as the H3K4...

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.

Xifeng Ren (409727)
Eviatar Nevo (55671)
Dongfa Sun (198916)
Genlou Sun (198908)

May 2013

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.</p

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in coding regions of targeted genes (with 10 bp of intronic flanking regions), according to each enrichment method.

Julien Philippe (164769)
Mehdi Derhourhi (829429)
Emmanuelle Durand (76789)
Emmanuel Vaillant (164763)
Aurélie Dechaume (179474)
Iandry Rabearivelo (829430)
Véronique Dhennin (829431)
Martine Vaxillaire (164818)
Franck De Graeve (91108)
Olivier Sand (81219)
Philippe Froguel (2247)
Amélie Bonnefond (179465)

November 2015

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in coding regions of targeted...

The percentage of target base pairs with at least 1x or 20x coverage for each replicated sample.

Yuan Qi (71013)
Xiuping Liu (149206)
Chang-gong Liu (5664232)
Bailing Wang (764488)
Kenneth R. Hess (764489)
W. Fraser Symmans (118635)
Weiwei Shi (139867)
Lajos Pusztai (78763)

July 2015

R1 = sequencing experiment 1, R2 = sequencing experiment 2, R3 = sequencing experiment 3.T...

Global silencing efficiency for each target gene.

Odile Filhol (124715)
Delphine Ciais (124722)
Christian Lajaunie (124727)
Peggy Charbonnier (124730)
Nicolas Foveau (124733)
Jean-Philippe Vert (124736)
Yves Vandenbrouck (72588)

October 2012

siRNA efficiency ratio represents the number of siRNA with >70% silencing activity over the total...

Base pairs and percentage of region covered on the Sequence Capture arrays.

Eva C. Verbeek (321979)
Marianna R. Bevova (321981)
Zoltán Bochdanovits (39582)
Patrizia Rizzu (260324)
Ingrid M. C. Bakker (321980)
Tiny Uithuisje (488601)
Eco J. De Geus (5656927)
Johannes H. Smit (321982)
Brenda W. Penninx (238627)
Dorret I. Boomsma (109746)
Witte J. G. Hoogendijk (321983)
Peter Heutink (39587)

November 2013

Base pairs and percentage of region covered on the Sequence Capture arrays.</p

Sequencing coverage of each gene.

Xinzhong Li (430872)
Andrew J. Buckton (430873)
Samuel L. Wilkinson (430874)
Shibu John (430875)
Roddy Walsh (430876)
Tomas Novotny (430877)
Iveta Valaskova (430878)
Manu Gupta (73376)
Laurence Game (47015)
Paul J R. Barton (430879)
Stuart A. Cook (227271)
James S. Ware (430880)

July 2013

The coverage of the protein-coding sequence of each gene of interest is tabulated, as a percentag...

The enrichment of the 155 selected target genes and the 162 selected between genes on OncoDB.HCC genes.

Tao Huang (110613)
Junjie Wang (172690)
Yu-Dong Cai (133116)
Hanry Yu (172694)
Kuo-Chen Chou (117713)

April 2012

The enrichment of the 155 selected target genes and the 162 selected between genes on OncoDB.HCC ...

Selected genes, their function and the number of tag SNPs required to reach 100% coverage at m.a.f.>0.1 and r2>0.8.

Eva C. Verbeek (321979)
Ingrid M. C. Bakker (321980)
Marianna R. Bevova (321981)
Zoltán Bochdanovits (39582)
Patrizia Rizzu (260324)
David Sondervan (39583)
Gonneke Willemsen (75573)
Eco J. de Geus (179549)
Johannes H. Smit (321982)
Brenda W. Penninx (238627)
Dorret I. Boomsma (109746)
Witte J. G. Hoogendijk (321983)
Peter Heutink (39587)

February 2013

Selected genes, their function and the number of tag SNPs required to reach 100% coverage at m.a....

Distribution of genes′ coverage in the two ovine libraries.

Han Ying Chen (705760)
Hong Shen (166278)
Bin Jia (372751)
Yong Sheng Zhang (705761)
Xu Hai Wang (705762)
Xian Cun Zeng (705763)

March 2015

Gene coverage is the percentage of a gene covered by reads. This value is equal to the ratio of t...

Numbers of genes with defined sequence coverage in each cultivar.

Yuko Arai-Kichise (512007)
Yuh Shiwa (512008)
Kaworu Ebana (177939)
Mari Shibata-Hatta (512009)
Hirofumi Yoshikawa (231503)
Masahiro Yano (177951)
Kyo Wakasa (512010)

January 2014

Sequence coverage indicating the percentage of coding sequences covered by short-reads.</p

Number of UTRs (ntotal = 197) exhaustively covered by 8, 20, 50 or 100 sequence reads, according to each enrichment method.

Julien Philippe (164769)
Mehdi Derhourhi (829429)
Emmanuelle Durand (76789)
Emmanuel Vaillant (164763)
Aurélie Dechaume (179474)
Iandry Rabearivelo (829430)
Véronique Dhennin (829431)
Martine Vaxillaire (164818)
Franck De Graeve (91108)
Olivier Sand (81219)
Philippe Froguel (2247)
Amélie Bonnefond (179465)

November 2015

Number of UTRs (ntotal = 197) exhaustively covered by 8, 20, 50 or 100 s...

Primer sequences and expected product size (bp) for the target and reference genes. Primer efficiency was >1.89, respectively.

Nada Charbaji (312006)
Monika Schäfer-Korting (312007)
Sarah Küchler (312008)

February 2013

Primer sequences and expected product size (bp) for the target and reference genes. Primer effici...

Percent of coverage representing the percentage of genes which expressed in each of the three stages mapped in the rice genome.

Hong Xu (71477)
Yi Gao (112914)
Jianbo Wang (184708)

February 2012

R1, 3–5 DAP; R2, 7 DAP; R3, 14 DAP. Gene coverage is the percentage of a gene covered by reads. T...

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necessary to achieve approximately 1X coverage across all genomes present in cultured and uncultured samples.

Andrea R. Ottesen (456164)
Antonio Gonzalez (2150521)
Rebecca Bell (456165)
Caroline Arce (456166)
Steven Rideout (456167)
Marc Allard (281187)
Peter Evans (456168)
Errol Strain (278122)
Steven Musser (456169)
Rob Knight (11635)
Eric Brown (281186)
James B. Pettengill (456170)

September 2013

Plots of the average number of base-pairs (in millions) observed and estimates of quantity necess...

Percentage of genes with only H3K4me3, or only H3K27me3 or both H3K4me3 and H3K27me3 enrichment in the chicken genome for each group.

Juan Luo (149338)
Apratim Mitra (130263)
Fei Tian (41830)
Shuang Chang (149341)
Huanmin Zhang (41829)
Kairong Cui (149344)
Ying Yu (7066)
Keji Zhao (149346)
Jiuzhou Song (41834)

July 2012

When there is an overlap of the H3K4me3 island with the TSS of a gene, it was defined as the H3K4...

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.

Xifeng Ren (409727)
Eviatar Nevo (55671)
Dongfa Sun (198916)
Genlou Sun (198908)

May 2013

Estimate of Nucleotide Diversity per Base Pair and Test of Neutral for HTL gene.</p

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in UTRs of targeted genes, according to each enrichment method.

Abstract

Extracted data

Percentage of base-pairs covered by 8, 20, 50 or 100 sequence reads in UTRs of targeted genes, according to each enrichment method.

Abstract

Extracted data

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