<p><b>(A)</b> Species tree chronogram with posterior probabilities, <b>(B)</b> DensiTree visualization of all estimated gene trees, and <b>(C)</b> DensiTree visualization of possible consensus trees for the even loci. Colors of lineages recovered by the species-tree <b>(A)</b> correspond to colors of polygons and doted circles in the geography of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0143392#pone.0143392.g001" target="_blank">Fig 1B</a>.</p
<p>The consensus tree is superimposed in blue. Dots at nodes indicate posterior support that is also...
<p>The species tree represents the population history that accounts for diversity within the species...
An important challenge for phylogenetic studies of closely related species is the existence of deep ...
(a) A tip-dated time tree, with leaf times as boundary conditions but not data (generally a coalesce...
<p>Clade posterior probabilities are indicated on branches (*>90%; **>98%). Symbols on the clades ar...
Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gen...
Under the multispecies coalescent model of molecular evolution, gene trees have independent evolutio...
<p>The tree was generated with the program BEAST. The blue bars illustrated the extent of the 95% hi...
<p>Bayesian posterior probabilities indicated above or below branches. Branch colors follow <a href=...
<p>The chronogram was estimated from a two-locus, (ITS and MCM7), coalescent-based species tree in *...
<p>In the combined analysis approach (top), the sequences of the four loci are concatenated, generat...
<p>On the chronogram, branches shown as thick black lines indicate posterior probabilities ≥0.95. Wh...
<p>Panel A: ML and BI trees of concatenated dataset (RAG1 and cyt <i>b</i> sequences); bootstrap val...
<p>A, Densitree, a consensus posterior density of trees representing the entire posterior distributi...
<p>Numbers below nodes on species tree correspond to posterior probability support. Earliest divergi...
<p>The consensus tree is superimposed in blue. Dots at nodes indicate posterior support that is also...
<p>The species tree represents the population history that accounts for diversity within the species...
An important challenge for phylogenetic studies of closely related species is the existence of deep ...
(a) A tip-dated time tree, with leaf times as boundary conditions but not data (generally a coalesce...
<p>Clade posterior probabilities are indicated on branches (*>90%; **>98%). Symbols on the clades ar...
Incomplete lineage sorting can cause incongruence between the phylogenetic history of genes (the gen...
Under the multispecies coalescent model of molecular evolution, gene trees have independent evolutio...
<p>The tree was generated with the program BEAST. The blue bars illustrated the extent of the 95% hi...
<p>Bayesian posterior probabilities indicated above or below branches. Branch colors follow <a href=...
<p>The chronogram was estimated from a two-locus, (ITS and MCM7), coalescent-based species tree in *...
<p>In the combined analysis approach (top), the sequences of the four loci are concatenated, generat...
<p>On the chronogram, branches shown as thick black lines indicate posterior probabilities ≥0.95. Wh...
<p>Panel A: ML and BI trees of concatenated dataset (RAG1 and cyt <i>b</i> sequences); bootstrap val...
<p>A, Densitree, a consensus posterior density of trees representing the entire posterior distributi...
<p>Numbers below nodes on species tree correspond to posterior probability support. Earliest divergi...
<p>The consensus tree is superimposed in blue. Dots at nodes indicate posterior support that is also...
<p>The species tree represents the population history that accounts for diversity within the species...
An important challenge for phylogenetic studies of closely related species is the existence of deep ...