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Volcano plot of 77 proteins.

Douglas C. Chang (830912)
Paolo Piaggi (360275)
Robert L. Hanson (135175)
William C. Knowler (136062)
John Bucci (830913)
Guene Thio (830914)
Maximilian G. Hohenadel (830915)
Clifton Bogardus (596744)
Jonathan Krakoff (163053)

Publication date

November 2015

DOI

10.1371/journal.pone.0143551.g002

Abstract

<p>FDR = False Discovery Rate. Lower p-values are towards the top. The statistically significant p-values are above the line. The proteins which have higher case-to-control signal ratios are further towards the right.</p

Extracted data

Related items

Differential abundance analysis of integrated peak intensities for 761 proteins associated with Tobi OMVs and Ctl OMVs.

Katja Koeppen (226723)
Roxanna Barnaby (745823)
Angelyca A. Jackson (3837772)
Scott A. Gerber (212370)
Deborah A. Hogan (182962)
Bruce A. Stanton (226728)

January 2019

Volcano plot of log2 fold changes and FDR-corrected p-values obtained with QPROT. 182 proteins with ...

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upregulated in the classic A-T group (left side) compared to non-A-T healthy age-matched controls.

Sharon A. McGrath-Morrow (694887)
Roland Ndeh (6157082)
Joseph M. Collaco (195530)
Cynthia Rothblum-Oviatt (6157085)
Jennifer Wright (6157088)
Michael A. O’Reilly (6157091)
Benjamin D. Singer (6157094)
Howard M. Lederman (427558)

December 2018

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upr...

Volcano plots showing the distribution of significance and fold change of identified proteins in the (A) sham+rt-PA/sham comparison and (B) tMCAo+rt-PA/tMCAo comparison.

Zamir Merali (570201)
Meah MingYang Gao (570202)
Tim Bowes (570203)
Jian Chen (15340)
Kenneth Evans (570204)
Andrea Kassner (570205)

May 2014

<p>All proteins with 2 or more peptides were plotted with fold change on the x-axis and p-value on t...

Erik Helgeland (644991)
Lars Ertesvåg Breivik (644992)
Marc Vaudel (644993)
Øyvind Sverre Svendsen (644994)
Hilde Garberg (644995)
Jan Erik Nordrehaug (644996)
Frode Steingrimsen Berven (644997)
Anne Kristine Jonassen (644998)

October 2014

<p>The significance of the relative regulation of 394 proteins was inspected using (1) a paired two-...

Proteins from volcano plot which had notable increases or decreases listed in order of greatest to least significance (adjusted p-values).

Eiman Y. Ibrahim (10731078)
Saira Munshani (13924737)
Ilaria Domenicano (10731081)
Rozalyn Rodwin (13924740)
Richard J. Nowak (304244)
Lajos Pusztai (78763)
Maryam Lustberg (8780039)
Barbara E. Ehrlich (10731087)

October 2022

Proteins from volcano plot which had notable increases or decreases listed in order of greatest to l...

Volcano plot for the identified proteins that were commonly found.

Siriwan Sakarin (17743193)
Anudep Rungsipipat (5323727)
Sittiruk Roytrakul (171387)
Janthima Jaresitthikunchai (575760)
Narumon Phaonakrop (707457)
Sawanya Charoenlappanit (10994078)
Siriwan Thaisakun (17200159)
Sirilak Disatian Surachetpong (17743196)

January 2024

Protein in the pulmonary arteries and lung tissues of dogs in the control and DMVD groups (a, c) and...

The volcano plot depicts the fold and p-value differences in expression levels of 136 proteins between the tumor and non-tumor tissues.

Jinghai Hu (3120363)
Fei Ye (339913)
Miao Cui (3569)
Peng Lee (144280)
Chengguo Wei (128335)
Yuanyuan Hao (402713)
Xiaoqing Wang (514179)
Yanbo Wang (618744)
Zhihua Lu (2668642)
Matthew Galsky (155344)
Russell McBride (3120360)
Li Wang (15202)
Dongwen Wang (687190)
Carlos Cordon-Cardo (2228)
Chunxi Wang (3120366)
David Y. Zhang (17998)

September 2016

<p>The horizontal blue line indicates p = 0.05 with points above the line having p < 0.05.</p

Volcano plot of significant (q≤0.10) differentially-expressed proteins integrated with changes in corresponding mRNA signals

Carmen M. Dumaual (453503)
Boyd A. Steere (453504)
Chad D. Walls (453505)
Mu Wang (235245)
Zhong-Yin Zhang (453506)
Stephen K. Randall (453507)

September 2013

<p>. The dot (•) symbols represent the Tier-1 proteins that were observed to be differentially expre...

Median and 90th percentile of False Discovery Rates (FDR) in order left-to-right of threshold value and number of statistically significant results for all three groups (C, BD, and SZ).

Meredith G. Banigan (239919)
Patricia F. Kao (239917)
James A. Kozubek (277743)
Ashley R. Winslow (277744)
Juan Medina (277745)
Joan Costa (277746)
Andrea Schmitt (277747)
Anja Schneider (277748)
Howard Cabral (277749)
Ozge Cagsal-Getkin (277750)
Charles R. Vanderburg (239921)
Ivana Delalle (239923)

January 2013

<p>The Y-axis is an estimate of the percentage of false positives. High-ranked miRNA (at the left) h...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Volcano plot of gene differentially expressed between statin users and non-users.

Ma’en Obeidat (460144)
Nick Fishbane (517664)
Yunlong Nie (812533)
Virginia Chen (812534)
Zsuzsanna Hollander (229895)
Scott J. Tebbutt (219490)
Yohan Bossé (69571)
Raymond T. Ng (253624)
Bruce E. Miller (164948)
Bruce McManus (128550)
Stephen Rennard (204838)
Peter D. Paré (116427)
Don D. Sin (116489)

October 2015

<p>The plot shows the log fold-change on the X-axis versus the unadjusted P values (on the–log10 sca...

False discovery rates (FDR) for identification of proteins and peptides using decoy method by Scaffold software.

Felipe Alves de Almeida (5843606)
Deisy Guimarães Carneiro (5843609)
Tiago Antônio de Oliveira Mendes (144307)
Edvaldo Barros (3684544)
Uelinton Manoel Pinto (5843612)
Leandro Licursi de Oliveira (374413)
Maria Cristina Dantas Vanetti (5843615)

October 2018

False discovery rates (FDR) for identification of proteins and peptides using decoy method by Scaffo...

Differential abundance analysis of integrated peak intensities for 761 proteins associated with Tobi OMVs and Ctl OMVs.

Katja Koeppen (226723)
Roxanna Barnaby (745823)
Angelyca A. Jackson (3837772)
Scott A. Gerber (212370)
Deborah A. Hogan (182962)
Bruce A. Stanton (226728)

January 2019

Volcano plot of log2 fold changes and FDR-corrected p-values obtained with QPROT. 182 proteins with ...

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upregulated in the classic A-T group (left side) compared to non-A-T healthy age-matched controls.

Sharon A. McGrath-Morrow (694887)
Roland Ndeh (6157082)
Joseph M. Collaco (195530)
Cynthia Rothblum-Oviatt (6157085)
Jennifer Wright (6157088)
Michael A. O’Reilly (6157091)
Benjamin D. Singer (6157094)
Howard M. Lederman (427558)

December 2018

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upr...

Volcano plots showing the distribution of significance and fold change of identified proteins in the (A) sham+rt-PA/sham comparison and (B) tMCAo+rt-PA/tMCAo comparison.

Zamir Merali (570201)
Meah MingYang Gao (570202)
Tim Bowes (570203)
Jian Chen (15340)
Kenneth Evans (570204)
Andrea Kassner (570205)

May 2014

<p>All proteins with 2 or more peptides were plotted with fold change on the x-axis and p-value on t...

Erik Helgeland (644991)
Lars Ertesvåg Breivik (644992)
Marc Vaudel (644993)
Øyvind Sverre Svendsen (644994)
Hilde Garberg (644995)
Jan Erik Nordrehaug (644996)
Frode Steingrimsen Berven (644997)
Anne Kristine Jonassen (644998)

October 2014

<p>The significance of the relative regulation of 394 proteins was inspected using (1) a paired two-...

Proteins from volcano plot which had notable increases or decreases listed in order of greatest to least significance (adjusted p-values).

Eiman Y. Ibrahim (10731078)
Saira Munshani (13924737)
Ilaria Domenicano (10731081)
Rozalyn Rodwin (13924740)
Richard J. Nowak (304244)
Lajos Pusztai (78763)
Maryam Lustberg (8780039)
Barbara E. Ehrlich (10731087)

October 2022

Proteins from volcano plot which had notable increases or decreases listed in order of greatest to l...

Volcano plot for the identified proteins that were commonly found.

Siriwan Sakarin (17743193)
Anudep Rungsipipat (5323727)
Sittiruk Roytrakul (171387)
Janthima Jaresitthikunchai (575760)
Narumon Phaonakrop (707457)
Sawanya Charoenlappanit (10994078)
Siriwan Thaisakun (17200159)
Sirilak Disatian Surachetpong (17743196)

January 2024

Protein in the pulmonary arteries and lung tissues of dogs in the control and DMVD groups (a, c) and...

The volcano plot depicts the fold and p-value differences in expression levels of 136 proteins between the tumor and non-tumor tissues.

Jinghai Hu (3120363)
Fei Ye (339913)
Miao Cui (3569)
Peng Lee (144280)
Chengguo Wei (128335)
Yuanyuan Hao (402713)
Xiaoqing Wang (514179)
Yanbo Wang (618744)
Zhihua Lu (2668642)
Matthew Galsky (155344)
Russell McBride (3120360)
Li Wang (15202)
Dongwen Wang (687190)
Carlos Cordon-Cardo (2228)
Chunxi Wang (3120366)
David Y. Zhang (17998)

September 2016

<p>The horizontal blue line indicates p = 0.05 with points above the line having p < 0.05.</p

Volcano plot of significant (q≤0.10) differentially-expressed proteins integrated with changes in corresponding mRNA signals

Carmen M. Dumaual (453503)
Boyd A. Steere (453504)
Chad D. Walls (453505)
Mu Wang (235245)
Zhong-Yin Zhang (453506)
Stephen K. Randall (453507)

September 2013

<p>. The dot (•) symbols represent the Tier-1 proteins that were observed to be differentially expre...

Median and 90th percentile of False Discovery Rates (FDR) in order left-to-right of threshold value and number of statistically significant results for all three groups (C, BD, and SZ).

Meredith G. Banigan (239919)
Patricia F. Kao (239917)
James A. Kozubek (277743)
Ashley R. Winslow (277744)
Juan Medina (277745)
Joan Costa (277746)
Andrea Schmitt (277747)
Anja Schneider (277748)
Howard Cabral (277749)
Ozge Cagsal-Getkin (277750)
Charles R. Vanderburg (239921)
Ivana Delalle (239923)

January 2013

<p>The Y-axis is an estimate of the percentage of false positives. High-ranked miRNA (at the left) h...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Differential protein abundance in GALD plasma vs healthy controls in Huh-7 cell line.

Klaus Rieneck (392917)
Karen Koefoed Rasmussen (17262738)
Erwin M. Schoof (1814932)
Frederik Banch Clausen (11657806)
Henrietta Holze (14253947)
Thomas Bergholt (558712)
Marianne Hørby Jørgensen (17262741)
Vibeke Brix Christensen (17262744)
Runar Almaas (17070973)
Peter Lüttge Jordal (17262747)
Marie Locard-Paulet (8250063)
Kasper Runager (1342683)
Leif Kofoed Nielsen (14675947)
Balthasar Clemens Schlotmann (17262750)
Joachim Lütken Weischenfeldt (17262753)
Lars Juhl Jensen (850)
Morten Hanefeld Dziegiel (17262756)

October 2023

A) Volcano plot depicting differential abundance of proteins in IPs with GALD plasma vs healthy plas...

Volcano plot of gene differentially expressed between statin users and non-users.

Ma’en Obeidat (460144)
Nick Fishbane (517664)
Yunlong Nie (812533)
Virginia Chen (812534)
Zsuzsanna Hollander (229895)
Scott J. Tebbutt (219490)
Yohan Bossé (69571)
Raymond T. Ng (253624)
Bruce E. Miller (164948)
Bruce McManus (128550)
Stephen Rennard (204838)
Peter D. Paré (116427)
Don D. Sin (116489)

October 2015

<p>The plot shows the log fold-change on the X-axis versus the unadjusted P values (on the–log10 sca...

False discovery rates (FDR) for identification of proteins and peptides using decoy method by Scaffold software.

Felipe Alves de Almeida (5843606)
Deisy Guimarães Carneiro (5843609)
Tiago Antônio de Oliveira Mendes (144307)
Edvaldo Barros (3684544)
Uelinton Manoel Pinto (5843612)
Leandro Licursi de Oliveira (374413)
Maria Cristina Dantas Vanetti (5843615)

October 2018

False discovery rates (FDR) for identification of proteins and peptides using decoy method by Scaffo...

Differential abundance analysis of integrated peak intensities for 761 proteins associated with Tobi OMVs and Ctl OMVs.

Katja Koeppen (226723)
Roxanna Barnaby (745823)
Angelyca A. Jackson (3837772)
Scott A. Gerber (212370)
Deborah A. Hogan (182962)
Bruce A. Stanton (226728)

January 2019

Volcano plot of log2 fold changes and FDR-corrected p-values obtained with QPROT. 182 proteins with ...

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upregulated in the classic A-T group (left side) compared to non-A-T healthy age-matched controls.

Sharon A. McGrath-Morrow (694887)
Roland Ndeh (6157082)
Joseph M. Collaco (195530)
Cynthia Rothblum-Oviatt (6157085)
Jennifer Wright (6157088)
Michael A. O’Reilly (6157091)
Benjamin D. Singer (6157094)
Howard M. Lederman (427558)

December 2018

Volcano plot of 310 DEGs depicting genes downregulated in the classic A-T group (right side) and upr...

Volcano plots showing the distribution of significance and fold change of identified proteins in the (A) sham+rt-PA/sham comparison and (B) tMCAo+rt-PA/tMCAo comparison.

Zamir Merali (570201)
Meah MingYang Gao (570202)
Tim Bowes (570203)
Jian Chen (15340)
Kenneth Evans (570204)
Andrea Kassner (570205)

May 2014

<p>All proteins with 2 or more peptides were plotted with fold change on the x-axis and p-value on t...