Additional file 3: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Additional file 1: Table S1. of Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a caseâcontrol study

Moana Mika (4269559)
Josua Maurer (4269550)
Insa Korten (4269553)
AurĂŠlie Allemann (4269571)
Suzanne Aebi (109264)
Silvio Brugger (4269556)
Weihong Qi (86598)
Urs Frey (346875)
Philipp Latzin (46181)
Markus Hilty (109268)

July 2017

Adjusted analysis of the association of different variables with the vaccine era using linear mixed ...

Additional file 4: of The impact of repeated vaccination on influenza vaccine effectiveness: a systematic review and meta-analysis

Lauren Ramsay (5696486)
Sarah Buchan (5696489)
Robert Stirling (3203181)
Benjamin Cowling (239971)
Shuo Feng (2124883)
Jeffrey Kwong (4118173)
Bryna Warshawsky (829483)

January 2019

Table S2. Meta-analysis pooled results by influenza season and influenza type/subtype (DOCX 26 kb

Additional file 1 of Evaluation of the added value of viral genomic information for predicting severity of influenza infection

Nina Van Goethem (7235117)
Annie Robert (3436289)
Nathalie Bossuyt (4753296)
Laura A. E. Van Poelvoorde (11257779)
Sophie Quoilin (6053414)
Sigrid C. J. De Keersmaecker (8144166)
Brecht Devleesschauwer (505283)
Isabelle Thomas (787900)
Kevin Vanneste (111764)
Nancy H. C. Roosens (8144163)
Herman Van Oyen (151907)

August 2021

Additional file 1. Appendix A: Internal validation. Appendix B: Exploration of other data analysis s...

Additional file 4: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Day 7 post vaccination/day 0 ( D SW d7/ D SW d0) Shannon-Weaver index ratio ( D SW ) for clonotypes ...

Additional file 6: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Per individual effect of immunization with 09 MIV on the repertoire of peripheral B-lymphocytes. Cha...

Additional file 2: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Serologic analysis of 08/09 TIV and 09 MIV 2009 response. Hemagglutination inhibition assay (HAI) an...

Additional file 5: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Pre- and post-vaccination SHM rates in selected IGHV segments according to vaccination trial. Dots d...

Additional file 7: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

CDRH2 sequence in large IGHV1-69 -expressing V H clonotypes. Sequence logos [55] of CDRH2 (IMGT numb...

RESEARCH Open Access

Irma López-martínez
Rodrigo Aparicio-antonio
Mario H. Rodríguez
Jesús Martínez-barnetche

August 2016

Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization wit...

Additional file 3: Figure S2. of Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis

Soner Yildiz (4751232)
Béryl Mazel-Sanchez (4751274)
Matheswaran Kandasamy (105167)
Balaji Manicassamy (89161)
Mirco Schmolke (145040)

January 2018

(A) rarefection plot: number of sequences is plotted against Chao1 estimator. Error bars indicate SE...

Additional file 4: of DSab-origin: a novel IGHD sensitive VDJ mapping method and its application on antibody response after influenza vaccination

Qingchen Zhang (728330)
Lu Zhang (50563)
Chen Zhou (466781)
Yiyan Yang (728332)
Zuojing Yin (6468596)
Dingfeng Wu (728333)
Kailin Tang (831050)
Zhiwei Cao (109083)

March 2019

Figure S3. Frequency changes of gene family usage in ASCs comparing to naive B cells. (DOCX 114 kb

Additional file 2: of Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism

Juilee Thakar (31567)
Boris Hartmann (3575480)
Nada Marjanovic (3575483)
Stuart Sealfon (3575486)
Steven Kleinstein (3575489)

August 2015

Figures showing normalized levels of IFNB1 (Figure S1) and identifiability of model parameters using...

Additional file 3: of Statistical inference of a convergent antibody repertoire response to influenza vaccine

Nicolas Strauli (3551255)
Ryan Hernandez (218444)

June 2016

Supplemental figures and supplemental Tables S1 and S2. Tables S3â8 are large so are instead inclu...

Additional file 1: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

Irina Maljkovic Berry (607088)
Melanie Melendrez (3586661)
Tao Li (86810)
Anthony Hawksworth (3608477)
Gary Brice (3546353)
Patrick Blair (3608465)
Eric Halsey (3608480)
Maya Williams (476301)
Stefan Fernandez (146590)
In-Kyu Yoon (150936)
Leslie Edwards (3608468)
Robert Kuschner (3608471)
Xiaoxu Lin (3608474)
Stephen Thomas (17628)
Richard Jarman (3608462)

December 2016

a) Nested PCR primers and b) universal and segment-specific primers. (XLSX 16 kb

Analysis of the human B cell repertoire following vaccination

Jacob Galson

January 2016

A diverse B cell repertoire is essential for recognition and response to infectious and vaccine anti...

Additional file 1: Table S1. of Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a caseâcontrol study

Moana Mika (4269559)
Josua Maurer (4269550)
Insa Korten (4269553)
AurĂŠlie Allemann (4269571)
Suzanne Aebi (109264)
Silvio Brugger (4269556)
Weihong Qi (86598)
Urs Frey (346875)
Philipp Latzin (46181)
Markus Hilty (109268)

July 2017

Adjusted analysis of the association of different variables with the vaccine era using linear mixed ...

Additional file 4: of The impact of repeated vaccination on influenza vaccine effectiveness: a systematic review and meta-analysis

Lauren Ramsay (5696486)
Sarah Buchan (5696489)
Robert Stirling (3203181)
Benjamin Cowling (239971)
Shuo Feng (2124883)
Jeffrey Kwong (4118173)
Bryna Warshawsky (829483)

January 2019

Table S2. Meta-analysis pooled results by influenza season and influenza type/subtype (DOCX 26 kb

Additional file 1 of Evaluation of the added value of viral genomic information for predicting severity of influenza infection

Nina Van Goethem (7235117)
Annie Robert (3436289)
Nathalie Bossuyt (4753296)
Laura A. E. Van Poelvoorde (11257779)
Sophie Quoilin (6053414)
Sigrid C. J. De Keersmaecker (8144166)
Brecht Devleesschauwer (505283)
Isabelle Thomas (787900)
Kevin Vanneste (111764)
Nancy H. C. Roosens (8144163)
Herman Van Oyen (151907)

August 2021

Additional file 1. Appendix A: Internal validation. Appendix B: Exploration of other data analysis s...

Additional file 4: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Day 7 post vaccination/day 0 ( D SW d7/ D SW d0) Shannon-Weaver index ratio ( D SW ) for clonotypes ...

Additional file 6: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Per individual effect of immunization with 09 MIV on the repertoire of peripheral B-lymphocytes. Cha...

Additional file 2: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Serologic analysis of 08/09 TIV and 09 MIV 2009 response. Hemagglutination inhibition assay (HAI) an...

Additional file 5: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

Pre- and post-vaccination SHM rates in selected IGHV segments according to vaccination trial. Dots d...

Additional file 7: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

CDRH2 sequence in large IGHV1-69 -expressing V H clonotypes. Sequence logos [55] of CDRH2 (IMGT numb...

RESEARCH Open Access

Irma López-martínez
Rodrigo Aparicio-antonio
Mario H. Rodríguez
Jesús Martínez-barnetche

August 2016

Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization wit...

Additional file 3: Figure S2. of Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis

Soner Yildiz (4751232)
Béryl Mazel-Sanchez (4751274)
Matheswaran Kandasamy (105167)
Balaji Manicassamy (89161)
Mirco Schmolke (145040)

January 2018

(A) rarefection plot: number of sequences is plotted against Chao1 estimator. Error bars indicate SE...

Additional file 4: of DSab-origin: a novel IGHD sensitive VDJ mapping method and its application on antibody response after influenza vaccination

Qingchen Zhang (728330)
Lu Zhang (50563)
Chen Zhou (466781)
Yiyan Yang (728332)
Zuojing Yin (6468596)
Dingfeng Wu (728333)
Kailin Tang (831050)
Zhiwei Cao (109083)

March 2019

Figure S3. Frequency changes of gene family usage in ASCs comparing to naive B cells. (DOCX 114 kb

Additional file 2: of Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism

Juilee Thakar (31567)
Boris Hartmann (3575480)
Nada Marjanovic (3575483)
Stuart Sealfon (3575486)
Steven Kleinstein (3575489)

August 2015

Figures showing normalized levels of IFNB1 (Figure S1) and identifiability of model parameters using...

Additional file 3: of Statistical inference of a convergent antibody repertoire response to influenza vaccine

Nicolas Strauli (3551255)
Ryan Hernandez (218444)

June 2016

Supplemental figures and supplemental Tables S1 and S2. Tables S3â8 are large so are instead inclu...

Additional file 1: of Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

Irina Maljkovic Berry (607088)
Melanie Melendrez (3586661)
Tao Li (86810)
Anthony Hawksworth (3608477)
Gary Brice (3546353)
Patrick Blair (3608465)
Eric Halsey (3608480)
Maya Williams (476301)
Stefan Fernandez (146590)
In-Kyu Yoon (150936)
Leslie Edwards (3608468)
Robert Kuschner (3608471)
Xiaoxu Lin (3608474)
Stephen Thomas (17628)
Richard Jarman (3608462)

December 2016

a) Nested PCR primers and b) universal and segment-specific primers. (XLSX 16 kb

Analysis of the human B cell repertoire following vaccination

Jacob Galson

January 2016

A diverse B cell repertoire is essential for recognition and response to infectious and vaccine anti...

Additional file 1: Table S1. of Influence of the pneumococcal conjugate vaccines on the temporal variation of pneumococcal carriage and the nasal microbiota in healthy infants: a longitudinal analysis of a caseâcontrol study

Moana Mika (4269559)
Josua Maurer (4269550)
Insa Korten (4269553)
AurĂŠlie Allemann (4269571)
Suzanne Aebi (109264)
Silvio Brugger (4269556)
Weihong Qi (86598)
Urs Frey (346875)
Philipp Latzin (46181)
Markus Hilty (109268)

July 2017

Adjusted analysis of the association of different variables with the vaccine era using linear mixed ...

Additional file 4: of The impact of repeated vaccination on influenza vaccine effectiveness: a systematic review and meta-analysis

Lauren Ramsay (5696486)
Sarah Buchan (5696489)
Robert Stirling (3203181)
Benjamin Cowling (239971)
Shuo Feng (2124883)
Jeffrey Kwong (4118173)
Bryna Warshawsky (829483)

January 2019

Table S2. Meta-analysis pooled results by influenza season and influenza type/subtype (DOCX 26 kb

Additional file 1 of Evaluation of the added value of viral genomic information for predicting severity of influenza infection

Nina Van Goethem (7235117)
Annie Robert (3436289)
Nathalie Bossuyt (4753296)
Laura A. E. Van Poelvoorde (11257779)
Sophie Quoilin (6053414)
Sigrid C. J. De Keersmaecker (8144166)
Brecht Devleesschauwer (505283)
Isabelle Thomas (787900)
Kevin Vanneste (111764)
Nancy H. C. Roosens (8144163)
Herman Van Oyen (151907)

August 2021

Additional file 1. Appendix A: Internal validation. Appendix B: Exploration of other data analysis s...

Additional file 3: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Abstract

Extracted data

Additional file 3: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Abstract

Extracted data

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