MOESM1 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Genomic Characterization Of Salmonella Free-Living Phages, Plasmids And Chromosomally Inserted Mobile Elements

Moreno Switt, Andrea

January 2013

Salmonella is a globally distributed foodborne pathogen. Historically, Salmonella have been associat...

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A
Dallman, Timothy J
Petrovska, Liljana
Kingsley, Robert A

November 2022

Salmonella enterica serovar Typhimurium ( S. Typhimurium) comprises a group of closely related human...

MOESM1 of Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Linto Antony (4605940)
Melissa Behr (6116618)
Donald Sockett (6116621)
Dale Miskimins (6116624)
Nicole Aulik (6116627)
Jane Christopher-Hennings (4984700)
Eric Nelson (2959734)
Marc Allard (281187)
Joy Scaria (74080)

December 2018

Additional file 1: Table S1. Metadata for 634 Salmonella ser. Heidelberg strains used in this study....

MOESM3 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 3: Table S3. SNPs within the chromosome (excluding prophages) of DT8 and DT30 isolat...

MOESM4 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 4: Table S4. Total variants among pSLT plasmid and the DT8 specific plasmid

MOESM5 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 5: Table S5. Annotation of the integrative and conjugative element of the DT30 isola...

Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak.

Mohammed, M.
Cormican, M.
Mohammed, M.
Cormican, M.

January 2015

Phage typing has been used for decades as a rapid, low cost approach for the epidemiological surveil...

Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak

Octavia, S
Wang, Q
Tanaka, MM
Kaur, S
Sintchenko, V
Lan, R

April 2015

Whole-genome next-generation sequencing (NGS) was used to retrospectively examine 57 isolates from f...

MOESM1 of Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?

Manal Mohammed (3453335)

November 2017

Additional file 1: Table S1. CRISPR and CRISPOL types of outbreak and non-outbreak associated DT8 st...

Bacterial genomics and its applications in molecular epidemiology of Salmonella enterica serovar Typhimurium

Pang, Stanley, Biotechnology & Biomolecular Sciences, Faculty of Science, UNSW

January 2012

Salmonella enterica serovar Typhimurium (or simply referred to as Typhimurium) is a food- and water-...

Table_1_Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.XLSX

Angela V. Lopez-Garcia (13929642)
Manal AbuOun (141061)
Javier Nunez-Garcia (246658)
Janet Y. Nale (7625564)
Edouard E. Gaylov (15364477)
Preeda Phothaworn (7768250)
Chutikarn Sukjoi (11312214)
Parameth Thiennimitr (3617402)
Danish J. Malik (7128008)
Sunee Korbsrisate (457741)
Martha R. J. Clokie (6901562)
Muna F. Anjum (8887205)

August 2023

Salmonella is a food-borne pathogen often linked to poultry sources, causing gastrointestinal infect...

Genomic and phenotypic comparison of two Salmonella Typhimurium strains responsible for consecutive salmonellosis outbreaks in New Zealand

Samuel J. Bloomfield
Jackie Benschop
Anne C. Midwinter
Patrick J. Biggs
Jonathan C. Marshall
David T.S. Hayman
Philip E. Carter
Marian Price-Carter
Leah Toombs-Ruane
Holly Gray
Sara Burgess
Nigel P. French

October 2021

Salmonella enterica serovar Typhimurium DT160 was the predominant cause of notified human salmonello...

Comparative genome analysis of the high pathogenicity Salmonella Typhimurium strain UK-1.

Yingqin Luo
Qingke Kong
Jiseon Yang
Arindam Mitra
Greg Golden
Soo-Young Wanda
Kenneth L Roland
Roderick V Jensen
Peter B Ernst
Roy Curtiss

Salmonella enterica serovar Typhimurium, a gram-negative facultative rod-shaped bacterium causing sa...

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

Cooke, F.J.
Brown, D.J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R.A.
Thomson, N.R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104

Cooke, F. J.
Brown, D. J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R. A.
Thomson, N. R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Genomic Characterization Of Salmonella Free-Living Phages, Plasmids And Chromosomally Inserted Mobile Elements

Moreno Switt, Andrea

January 2013

Salmonella is a globally distributed foodborne pathogen. Historically, Salmonella have been associat...

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A
Dallman, Timothy J
Petrovska, Liljana
Kingsley, Robert A

November 2022

Salmonella enterica serovar Typhimurium ( S. Typhimurium) comprises a group of closely related human...

MOESM1 of Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Linto Antony (4605940)
Melissa Behr (6116618)
Donald Sockett (6116621)
Dale Miskimins (6116624)
Nicole Aulik (6116627)
Jane Christopher-Hennings (4984700)
Eric Nelson (2959734)
Marc Allard (281187)
Joy Scaria (74080)

December 2018

Additional file 1: Table S1. Metadata for 634 Salmonella ser. Heidelberg strains used in this study....

MOESM3 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 3: Table S3. SNPs within the chromosome (excluding prophages) of DT8 and DT30 isolat...

MOESM4 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 4: Table S4. Total variants among pSLT plasmid and the DT8 specific plasmid

MOESM5 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 5: Table S5. Annotation of the integrative and conjugative element of the DT30 isola...

Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak.

Mohammed, M.
Cormican, M.
Mohammed, M.
Cormican, M.

January 2015

Phage typing has been used for decades as a rapid, low cost approach for the epidemiological surveil...

Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak

Octavia, S
Wang, Q
Tanaka, MM
Kaur, S
Sintchenko, V
Lan, R

April 2015

Whole-genome next-generation sequencing (NGS) was used to retrospectively examine 57 isolates from f...

MOESM1 of Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?

Manal Mohammed (3453335)

November 2017

Additional file 1: Table S1. CRISPR and CRISPOL types of outbreak and non-outbreak associated DT8 st...

Bacterial genomics and its applications in molecular epidemiology of Salmonella enterica serovar Typhimurium

Pang, Stanley, Biotechnology & Biomolecular Sciences, Faculty of Science, UNSW

January 2012

Salmonella enterica serovar Typhimurium (or simply referred to as Typhimurium) is a food- and water-...

Table_1_Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.XLSX

Angela V. Lopez-Garcia (13929642)
Manal AbuOun (141061)
Javier Nunez-Garcia (246658)
Janet Y. Nale (7625564)
Edouard E. Gaylov (15364477)
Preeda Phothaworn (7768250)
Chutikarn Sukjoi (11312214)
Parameth Thiennimitr (3617402)
Danish J. Malik (7128008)
Sunee Korbsrisate (457741)
Martha R. J. Clokie (6901562)
Muna F. Anjum (8887205)

August 2023

Salmonella is a food-borne pathogen often linked to poultry sources, causing gastrointestinal infect...

Genomic and phenotypic comparison of two Salmonella Typhimurium strains responsible for consecutive salmonellosis outbreaks in New Zealand

Samuel J. Bloomfield
Jackie Benschop
Anne C. Midwinter
Patrick J. Biggs
Jonathan C. Marshall
David T.S. Hayman
Philip E. Carter
Marian Price-Carter
Leah Toombs-Ruane
Holly Gray
Sara Burgess
Nigel P. French

October 2021

Salmonella enterica serovar Typhimurium DT160 was the predominant cause of notified human salmonello...

Comparative genome analysis of the high pathogenicity Salmonella Typhimurium strain UK-1.

Yingqin Luo
Qingke Kong
Jiseon Yang
Arindam Mitra
Greg Golden
Soo-Young Wanda
Kenneth L Roland
Roderick V Jensen
Peter B Ernst
Roy Curtiss

Salmonella enterica serovar Typhimurium, a gram-negative facultative rod-shaped bacterium causing sa...

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

Cooke, F.J.
Brown, D.J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R.A.
Thomson, N.R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104

Cooke, F. J.
Brown, D. J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R. A.
Thomson, N. R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Genomic Characterization Of Salmonella Free-Living Phages, Plasmids And Chromosomally Inserted Mobile Elements

Moreno Switt, Andrea

January 2013

Salmonella is a globally distributed foodborne pathogen. Historically, Salmonella have been associat...

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A
Dallman, Timothy J
Petrovska, Liljana
Kingsley, Robert A

November 2022

Salmonella enterica serovar Typhimurium ( S. Typhimurium) comprises a group of closely related human...

MOESM1 of Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Linto Antony (4605940)
Melissa Behr (6116618)
Donald Sockett (6116621)
Dale Miskimins (6116624)
Nicole Aulik (6116627)
Jane Christopher-Hennings (4984700)
Eric Nelson (2959734)
Marc Allard (281187)
Joy Scaria (74080)

December 2018

Additional file 1: Table S1. Metadata for 634 Salmonella ser. Heidelberg strains used in this study....

MOESM1 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Abstract

Extracted data

MOESM1 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Abstract

Extracted data

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