MOESM4 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J.
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A.
Dallman, Timothy J.
Petrovska, Liljana
Kingsley, Robert A.

November 2022

Salmonella enterica serovar Typhimurium (S. Typhimurium) comprises a group of closely related human ...

Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport

Pan, Z. S.
Carter, B.
Nunez-Garcia, J.
AbuOun, M.
Fookes, M.
Ivens, A.
Woodward, Martin J.
Anjum, M. F.

January 2009

In this study, differences at the genetic level of 37 Salmonella Enteritidis strains from five phage...

Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants

August 2016

Salmonella enterica serovar Typhimurium (S. Typhimurium) is a common cause of gastroenteritis in hum...

MOESM1 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 1: Table S1. VCFs of DT8 and DT30 including SNPs and their effect

MOESM3 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 3: Table S3. SNPs within the chromosome (excluding prophages) of DT8 and DT30 isolat...

MOESM5 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 5: Table S5. Annotation of the integrative and conjugative element of the DT30 isola...

Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak.

Mohammed, M.
Cormican, M.
Mohammed, M.
Cormican, M.

January 2015

Phage typing has been used for decades as a rapid, low cost approach for the epidemiological surveil...

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

Cooke, F.J.
Brown, D.J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R.A.
Thomson, N.R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104

Cooke, F. J.
Brown, D. J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R. A.
Thomson, N. R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

MOESM1 of Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?

Manal Mohammed (3453335)

November 2017

Additional file 1: Table S1. CRISPR and CRISPOL types of outbreak and non-outbreak associated DT8 st...

Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak

Octavia, S
Wang, Q
Tanaka, MM
Kaur, S
Sintchenko, V
Lan, R

April 2015

Whole-genome next-generation sequencing (NGS) was used to retrospectively examine 57 isolates from f...

Genomic and phenotypic comparison of two Salmonella Typhimurium strains responsible for consecutive salmonellosis outbreaks in New Zealand

Samuel J. Bloomfield
Jackie Benschop
Anne C. Midwinter
Patrick J. Biggs
Jonathan C. Marshall
David T.S. Hayman
Philip E. Carter
Marian Price-Carter
Leah Toombs-Ruane
Holly Gray
Sara Burgess
Nigel P. French

October 2021

Salmonella enterica serovar Typhimurium DT160 was the predominant cause of notified human salmonello...

Genomic Characterization Of Salmonella Free-Living Phages, Plasmids And Chromosomally Inserted Mobile Elements

Moreno Switt, Andrea

January 2013

Salmonella is a globally distributed foodborne pathogen. Historically, Salmonella have been associat...

Bacterial genomics and its applications in molecular epidemiology of Salmonella enterica serovar Typhimurium

Pang, Stanley, Biotechnology & Biomolecular Sciences, Faculty of Science, UNSW

January 2012

Salmonella enterica serovar Typhimurium (or simply referred to as Typhimurium) is a food- and water-...

Table_1_Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.XLSX

Angela V. Lopez-Garcia (13929642)
Manal AbuOun (141061)
Javier Nunez-Garcia (246658)
Janet Y. Nale (7625564)
Edouard E. Gaylov (15364477)
Preeda Phothaworn (7768250)
Chutikarn Sukjoi (11312214)
Parameth Thiennimitr (3617402)
Danish J. Malik (7128008)
Sunee Korbsrisate (457741)
Martha R. J. Clokie (6901562)
Muna F. Anjum (8887205)

August 2023

Salmonella is a food-borne pathogen often linked to poultry sources, causing gastrointestinal infect...

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J.
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A.
Dallman, Timothy J.
Petrovska, Liljana
Kingsley, Robert A.

November 2022

Salmonella enterica serovar Typhimurium (S. Typhimurium) comprises a group of closely related human ...

Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport

Pan, Z. S.
Carter, B.
Nunez-Garcia, J.
AbuOun, M.
Fookes, M.
Ivens, A.
Woodward, Martin J.
Anjum, M. F.

January 2009

In this study, differences at the genetic level of 37 Salmonella Enteritidis strains from five phage...

Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants

August 2016

Salmonella enterica serovar Typhimurium (S. Typhimurium) is a common cause of gastroenteritis in hum...

MOESM1 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 1: Table S1. VCFs of DT8 and DT30 including SNPs and their effect

MOESM3 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 3: Table S3. SNPs within the chromosome (excluding prophages) of DT8 and DT30 isolat...

MOESM5 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Manal Mohammed (3453335)
Martin Cormican (404348)

November 2015

Additional file 5: Table S5. Annotation of the integrative and conjugative element of the DT30 isola...

Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak.

Mohammed, M.
Cormican, M.
Mohammed, M.
Cormican, M.

January 2015

Phage typing has been used for decades as a rapid, low cost approach for the epidemiological surveil...

Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104

Cooke, F.J.
Brown, D.J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R.A.
Thomson, N.R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

Characterization of the Genomes of a Diverse Collection of Salmonella enterica Serovar Typhimurium Definitive Phage Type 104

Cooke, F. J.
Brown, D. J.
Fookes, M.
Pickard, D.
Ivens, A.
Wain, J.
Roberts, M.
Kingsley, R. A.
Thomson, N. R.
Dougan, G.

December 2008

Salmonella enterica serovar Typhimurium definitive phage type 104 (DT104) has caused significant mor...

MOESM1 of Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?

Manal Mohammed (3453335)

November 2017

Additional file 1: Table S1. CRISPR and CRISPOL types of outbreak and non-outbreak associated DT8 st...

Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak

Octavia, S
Wang, Q
Tanaka, MM
Kaur, S
Sintchenko, V
Lan, R

April 2015

Whole-genome next-generation sequencing (NGS) was used to retrospectively examine 57 isolates from f...

Genomic and phenotypic comparison of two Salmonella Typhimurium strains responsible for consecutive salmonellosis outbreaks in New Zealand

Samuel J. Bloomfield
Jackie Benschop
Anne C. Midwinter
Patrick J. Biggs
Jonathan C. Marshall
David T.S. Hayman
Philip E. Carter
Marian Price-Carter
Leah Toombs-Ruane
Holly Gray
Sara Burgess
Nigel P. French

October 2021

Salmonella enterica serovar Typhimurium DT160 was the predominant cause of notified human salmonello...

Genomic Characterization Of Salmonella Free-Living Phages, Plasmids And Chromosomally Inserted Mobile Elements

Moreno Switt, Andrea

January 2013

Salmonella is a globally distributed foodborne pathogen. Historically, Salmonella have been associat...

Bacterial genomics and its applications in molecular epidemiology of Salmonella enterica serovar Typhimurium

Pang, Stanley, Biotechnology & Biomolecular Sciences, Faculty of Science, UNSW

January 2012

Salmonella enterica serovar Typhimurium (or simply referred to as Typhimurium) is a food- and water-...

Table_1_Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.XLSX

Angela V. Lopez-Garcia (13929642)
Manal AbuOun (141061)
Javier Nunez-Garcia (246658)
Janet Y. Nale (7625564)
Edouard E. Gaylov (15364477)
Preeda Phothaworn (7768250)
Chutikarn Sukjoi (11312214)
Parameth Thiennimitr (3617402)
Danish J. Malik (7128008)
Sunee Korbsrisate (457741)
Martha R. J. Clokie (6901562)
Muna F. Anjum (8887205)

August 2023

Salmonella is a food-borne pathogen often linked to poultry sources, causing gastrointestinal infect...

Increased phage resistance through lysogenic conversion accompanying emergence of monophasic Salmonella Typhimurium ST34 pandemic strain

Charity, Oliver J.
Acton, Luke
Bawn, Matt
Tassinari, Eleonora
Thilliez, Gaёtan
Chattaway, Marie A.
Dallman, Timothy J.
Petrovska, Liljana
Kingsley, Robert A.

November 2022

Salmonella enterica serovar Typhimurium (S. Typhimurium) comprises a group of closely related human ...

Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport

Pan, Z. S.
Carter, B.
Nunez-Garcia, J.
AbuOun, M.
Fookes, M.
Ivens, A.
Woodward, Martin J.
Anjum, M. F.

January 2009

In this study, differences at the genetic level of 37 Salmonella Enteritidis strains from five phage...

Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants

August 2016

Salmonella enterica serovar Typhimurium (S. Typhimurium) is a common cause of gastroenteritis in hum...

MOESM4 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Abstract

Extracted data

MOESM4 of Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak

Abstract

Extracted data

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