<p>The 43 systems reported in this table are the ones for which ADFR correctly reports the docked solution (i.e. ligand RMSD < 2.5Å). The rank of the solution among 50 GA runs is reported. White cells correspond to flexible side-chains not interacting with the ligand in either the <i>holo</i> or the docked complex. Grey cells indicate interactions formed in the docked solution, which do not exist in the <i>holo</i> complex. The remainder of the cells is colored using a red to green color scale indicating the percentage of <i>holo</i> interacting atomic pairs reproduced by the docked solution. A green cell (rate of 100%) indicates that every pairwise atomic interaction between ligand atoms and the side-chain atoms of the residue correspondin...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
<p>(A) Root mean square deviation of the ligand (RMSD<sub>lig</sub>) helix (backbone atoms, after su...
a<p>The lowest energy binding mode from the largest 5 clusters, determined by heavy-atom ligand RMSD...
<p>The left panels of <b>(A)</b>, <b>(B)</b> and <b>(C)</b> show the one dimensional projection of b...
<p>LAO docking poses are shown (purple) for (a) apo, (b) gen1, (c) gen4 and (d) gen6 aligned to the ...
Abstract: We have developed a simple docking procedure that is able to utilize low-resolution models...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
<p>(A) Bound reference structure of the protein homodimer test case (receptor, chain A of pdb2oo9, a...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
<p>Top left: Experimental structure of PDB: 1IUP, coded as CSAR datapoint ‘set1_120’. Waters (Oxygen...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
The rapidly increasing number of high-resolution X-ray structures of G-protein coupled receptors (GP...
<div><p>The rapidly increasing number of high-resolution X-ray structures of G-protein coupled recep...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
<p>(A) Root mean square deviation of the ligand (RMSD<sub>lig</sub>) helix (backbone atoms, after su...
a<p>The lowest energy binding mode from the largest 5 clusters, determined by heavy-atom ligand RMSD...
<p>The left panels of <b>(A)</b>, <b>(B)</b> and <b>(C)</b> show the one dimensional projection of b...
<p>LAO docking poses are shown (purple) for (a) apo, (b) gen1, (c) gen4 and (d) gen6 aligned to the ...
Abstract: We have developed a simple docking procedure that is able to utilize low-resolution models...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
<p>(A) Bound reference structure of the protein homodimer test case (receptor, chain A of pdb2oo9, a...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
<p>Top left: Experimental structure of PDB: 1IUP, coded as CSAR datapoint ‘set1_120’. Waters (Oxygen...
Quantitative understanding of molecular recognition is key for basic research and computer-aided dru...
The rapidly increasing number of high-resolution X-ray structures of G-protein coupled receptors (GP...
<div><p>The rapidly increasing number of high-resolution X-ray structures of G-protein coupled recep...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
In this paper, a method of simulating the docking of small flexible ligands to flexible receptors in...
<p>(A) Root mean square deviation of the ligand (RMSD<sub>lig</sub>) helix (backbone atoms, after su...