A list of 138 validated deletions from the literature and 105 previously predicted novel sequence insertions identified by the 1000 Genomes Projects for human NIST standard NA12878. The genome coordinates are mapped to hg19. (XLSX 18 kb
Figure S6. Sequencing coverage comparison of detected WES and RNA-seq indels in SU2C cohort. (PDF 97...
Tables S1-S7. and Figures S1-S4. Full legends are contained within the file. (PDF 378 kb
Rt on the query protein, 10 gs_A is shown. The screenshot displays indel sites between the query and...
Targeted regions of cancer gene panel. The genome coordinates are mapped to hg19. (XLSX 11 kb
Performance comparison for indel detection from short tandem repeat region of the NA12878 sample. Re...
Indel detection by ScanIndel with 2âĂâ150-bp amplicon sequencing reads. (XLSX 44 kb
Putative complex indels curated from GIAB high-confidence variant calls (n = 160). Table S2. Closely...
Figures S1-S14. Complex indels detected in samples 1â14 and orthogonal validation. (PDF 1637 kb
Figure S4. Examples of detected 214 bp deletion in 3’UTR of ATAD5 and 30 bp insertion in exon 15 of ...
Figure S3. TransIndel detects a 3433Â bp deletion in AR from human prostate cancer sample. (PDF 330Â...
Figure S2. Benchmarking of transIndel for mid-sized indels against existing indel detection tools us...
Table S1. Chunk Distribution Across The Reference Genome (Human Assembly Version GRCh37). File consi...
Figure S7. An example of FOXA1 deletion detected by RNA-seq but missed by WES due to low coverage in...
Figure S1. Schematic of the bioinformatics pipeline for UDiTaS analysis. (PPTX 61Â kb
Table S1. Identity-Linked SNP and SNP Island Genomic Locations. Reported global allele frequencies a...
Figure S6. Sequencing coverage comparison of detected WES and RNA-seq indels in SU2C cohort. (PDF 97...
Tables S1-S7. and Figures S1-S4. Full legends are contained within the file. (PDF 378 kb
Rt on the query protein, 10 gs_A is shown. The screenshot displays indel sites between the query and...
Targeted regions of cancer gene panel. The genome coordinates are mapped to hg19. (XLSX 11 kb
Performance comparison for indel detection from short tandem repeat region of the NA12878 sample. Re...
Indel detection by ScanIndel with 2âĂâ150-bp amplicon sequencing reads. (XLSX 44 kb
Putative complex indels curated from GIAB high-confidence variant calls (n = 160). Table S2. Closely...
Figures S1-S14. Complex indels detected in samples 1â14 and orthogonal validation. (PDF 1637 kb
Figure S4. Examples of detected 214 bp deletion in 3’UTR of ATAD5 and 30 bp insertion in exon 15 of ...
Figure S3. TransIndel detects a 3433Â bp deletion in AR from human prostate cancer sample. (PDF 330Â...
Figure S2. Benchmarking of transIndel for mid-sized indels against existing indel detection tools us...
Table S1. Chunk Distribution Across The Reference Genome (Human Assembly Version GRCh37). File consi...
Figure S7. An example of FOXA1 deletion detected by RNA-seq but missed by WES due to low coverage in...
Figure S1. Schematic of the bioinformatics pipeline for UDiTaS analysis. (PPTX 61Â kb
Table S1. Identity-Linked SNP and SNP Island Genomic Locations. Reported global allele frequencies a...
Figure S6. Sequencing coverage comparison of detected WES and RNA-seq indels in SU2C cohort. (PDF 97...
Tables S1-S7. and Figures S1-S4. Full legends are contained within the file. (PDF 378 kb
Rt on the query protein, 10 gs_A is shown. The screenshot displays indel sites between the query and...