Overlap of the core responses to MAB and MTB. 73 genes were identified in both datasets. “Induced” indicates that the gene shows an increase in abundance upon infection; “Repressed” indicates that the gene shows a decrease in abundance upon infection. (XLSX 8 kb
Table S3. Induced enhancers with associated target DEGs up-regulated at 4âh post infection. (XLSX ...
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...
Multidimensional scaling (MDS) plot of libraries at the indicated time point post infection, based u...
Betweenness centralities and degrees of connectivity of genes comprising the core response network. ...
Viability of intracellular MAB. Line plots show the numbers of viable bacteria derived from infected...
Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs wer...
Macrophage death assay. Viability of MAB-infected macrophages was evaluated by Trypan blue exclusion...
Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, t...
Enrichment of functional categories among differentially expressed genes in response to antibiotic t...
Full list of experimental TSSs identified in M. abscessus, with motifs identified within their promo...
Mycobacterium tuberculosis is one of the most prolific pathogens worldwide, and its virulence reside...
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Hierarchical clustering of the inflammation related gene expression data. This is the underlying dat...
Table S3. Induced enhancers with associated target DEGs up-regulated at 4âh post infection. (XLSX ...
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...
Multidimensional scaling (MDS) plot of libraries at the indicated time point post infection, based u...
Betweenness centralities and degrees of connectivity of genes comprising the core response network. ...
Viability of intracellular MAB. Line plots show the numbers of viable bacteria derived from infected...
Differentially expressed (DE) miRNAs identified in response to MAB-R and MAB-S infection. miRNAs wer...
Macrophage death assay. Viability of MAB-infected macrophages was evaluated by Trypan blue exclusion...
Read mapping statistics for RNA-seq and small RNA-seq (sRNA-seq) libraries. For RNA-seq libraries, t...
Enrichment of functional categories among differentially expressed genes in response to antibiotic t...
Full list of experimental TSSs identified in M. abscessus, with motifs identified within their promo...
Mycobacterium tuberculosis is one of the most prolific pathogens worldwide, and its virulence reside...
Figure S2. Higher number of associated enhancers is a concomitant of higher gene expression and immu...
Figure S4. 257 induced enhancers associated with 263 DEGs up-regulated at 4âh post infection. (PDF...
Hierarchical clustering of the inflammation related gene expression data. This is the underlying dat...
Table S3. Induced enhancers with associated target DEGs up-regulated at 4âh post infection. (XLSX ...
Table S1. A list of DEGs up-regulated at any time points, with their associated enhancers in infecte...
Table S7. Acquired enhancers with associated target genes up-regulated at 4âh post infection. (XLS...