MOESM4 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

MOESM3 of A CCR5+ memory subset within HIV-1-infected primary resting CD4+ T cells is permissive for replication-competent, latently infected viruses in vitro

Kazutaka Terahara (291175)
Ryutaro Iwabuchi (5280461)
Masahito Hosokawa (295783)
Yohei Nishikawa (798080)
Haruko Takeyama (295088)
Yoshimasa Takahashi (512476)
Yasuko Tsunetsugu-Yokota (264074)

April 2019

Additional file 3: Fig. S3. Data from separate experiments for the evaluation of HIV-1 binding (S3-1...

New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Wacleche, Vanessa Sue
Goulet, Jean-Philippe
Gosselin, Annie
Monteiro, Patricia
Soudeyns, Hugo
Fromentin, Rémi
Jenabian, Mohammad-Ali
Vartanian, Shant
Deeks, Steven G
Chomont, Nicolas
Routy, Jean-Pierre
Ancuta, Petronela

December 2016

BackgroundTh17 cells are permissive to HIV-1 infection and their depletion from the gut of infected ...

Defining Differential Genetic Signatures in CXCR4- and the CCR5-Utilizing HIV-1 Co-Linear Sequences

Benjamas Aiamkitsumrit
Will Dampier
Julio Martin-garcia
Michael R. Nonnemacher
Vanessa Pirrone
Tatyana Ivanova
Wen Zhong
Evelyn Kilareski
Hazeez Aldigun
Brian Frantz
Matthew Rimbey
Adam Wojno
Shendra Passic
Jean W. Williams

August 2016

The adaptation of human immunodeficiency virus type-1 (HIV-1) to an array of physiologic niches is a...

MOESM5 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

AurĂŠlie Cleret-Buhot (3462104)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
CĂŠcile Tremblay (3462107)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 5: Figure S2. Included are top canonical pathways (C2) (a), transcription factors (C...

MOESM2 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

Aurélie Cleret-Buhot (310066)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
Cécile Tremblay (141827)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 2: Table S2. The complete list of genes down regulated in Th17 versus Th1 subsets ar...

MOESM6 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

AurĂŠlie Cleret-Buhot (3462104)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
CĂŠcile Tremblay (3462107)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 6: Figure S3. A meta-analysis for transcripts included in the NCBI HIV Interaction d...

MOESM3 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

Aurélie Cleret-Buhot (310066)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
Cécile Tremblay (141827)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 3: Figure S1. a A heat map including the hierarchical clustering of all differential...

Identification of novel HIV‑1 dependency

Yuwei Zhang
Delphine Planas
Patricia Monteiro
Annie Gosselin
Vanessa Sue Wacleche
Cécile L. Tremblay
Nicolas Chomont
Elias K. Haddad
Petronela Ancuta

August 2016

factors in primary CCR4+CCR6+Th17 cells via a genome‑wide transcriptional approac

MOESM2 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
RĂŠmi Fromentin (3436115)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 2. Genome-wide transcriptional profiling of the newly identified CCR6+DN and CCR6+DP...

MOESM1 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 1: Analysis of genes differentially expressed during HIV 89.6 infection of primary C...

MOESM5 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 5. Flow cytometry analysis of cytokine co-expression at single-cell level by CM subs...

MOESM6 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 6. Poly-functional profiles of CM CCR6+ subsets upon long-term culture under Th17 ve...

MOESM2 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 2: Analysis of Gene Ontology categories associated with differential expression duri...

MOESM3 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 3: Studies used in a meta-analysis of differential expression during HIV infection. ...

MOESM1 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 1. Purity of flow cytometry-sorted memory CD4+ T-cell subsets. Total CD4+ T-cells we...

MOESM3 of A CCR5+ memory subset within HIV-1-infected primary resting CD4+ T cells is permissive for replication-competent, latently infected viruses in vitro

Kazutaka Terahara (291175)
Ryutaro Iwabuchi (5280461)
Masahito Hosokawa (295783)
Yohei Nishikawa (798080)
Haruko Takeyama (295088)
Yoshimasa Takahashi (512476)
Yasuko Tsunetsugu-Yokota (264074)

April 2019

Additional file 3: Fig. S3. Data from separate experiments for the evaluation of HIV-1 binding (S3-1...

New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Wacleche, Vanessa Sue
Goulet, Jean-Philippe
Gosselin, Annie
Monteiro, Patricia
Soudeyns, Hugo
Fromentin, Rémi
Jenabian, Mohammad-Ali
Vartanian, Shant
Deeks, Steven G
Chomont, Nicolas
Routy, Jean-Pierre
Ancuta, Petronela

December 2016

BackgroundTh17 cells are permissive to HIV-1 infection and their depletion from the gut of infected ...

Defining Differential Genetic Signatures in CXCR4- and the CCR5-Utilizing HIV-1 Co-Linear Sequences

Benjamas Aiamkitsumrit
Will Dampier
Julio Martin-garcia
Michael R. Nonnemacher
Vanessa Pirrone
Tatyana Ivanova
Wen Zhong
Evelyn Kilareski
Hazeez Aldigun
Brian Frantz
Matthew Rimbey
Adam Wojno
Shendra Passic
Jean W. Williams

August 2016

The adaptation of human immunodeficiency virus type-1 (HIV-1) to an array of physiologic niches is a...

MOESM5 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

AurĂŠlie Cleret-Buhot (3462104)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
CĂŠcile Tremblay (3462107)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 5: Figure S2. Included are top canonical pathways (C2) (a), transcription factors (C...

MOESM2 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

Aurélie Cleret-Buhot (310066)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
Cécile Tremblay (141827)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 2: Table S2. The complete list of genes down regulated in Th17 versus Th1 subsets ar...

MOESM6 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

AurĂŠlie Cleret-Buhot (3462104)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
CĂŠcile Tremblay (3462107)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 6: Figure S3. A meta-analysis for transcripts included in the NCBI HIV Interaction d...

MOESM3 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

Aurélie Cleret-Buhot (310066)
Yuwei Zhang (388956)
Delphine Planas (3462101)
Jean-Philippe Goulet (141820)
Patricia Monteiro (175525)
Annie Gosselin (175520)
Vanessa Wacleche (3436112)
Cécile Tremblay (141827)
Mohammad-Ali Jenabian (49586)
Jean-Pierre Routy (118465)
Mohamed El-Far (141824)
Nicolas Chomont (175516)
Elias Haddad (506314)
Rafick-Pierre Sekaly (2551261)
Petronela Ancuta (93066)

December 2015

Additional file 3: Figure S1. a A heat map including the hierarchical clustering of all differential...

Identification of novel HIV‑1 dependency

Yuwei Zhang
Delphine Planas
Patricia Monteiro
Annie Gosselin
Vanessa Sue Wacleche
Cécile L. Tremblay
Nicolas Chomont
Elias K. Haddad
Petronela Ancuta

August 2016

factors in primary CCR4+CCR6+Th17 cells via a genome‑wide transcriptional approac

MOESM2 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
RĂŠmi Fromentin (3436115)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 2. Genome-wide transcriptional profiling of the newly identified CCR6+DN and CCR6+DP...

MOESM1 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 1: Analysis of genes differentially expressed during HIV 89.6 infection of primary C...

MOESM5 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 5. Flow cytometry analysis of cytokine co-expression at single-cell level by CM subs...

MOESM6 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 6. Poly-functional profiles of CM CCR6+ subsets upon long-term culture under Th17 ve...

MOESM2 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 2: Analysis of Gene Ontology categories associated with differential expression duri...

MOESM3 of Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Scott Sherrill-Mix (692150)
Karen Ocwieja (3527072)
Frederic Bushman (3286380)

September 2015

Additional file 3: Studies used in a meta-analysis of differential expression during HIV infection. ...

MOESM1 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Vanessa Wacleche (3436112)
Jean-Philippe Goulet (141820)
Annie Gosselin (175520)
Patricia Monteiro (175525)
Hugo Soudeyns (150853)
Rémi Fromentin (659658)
Mohammad-Ali Jenabian (49586)
Shant Vartanian (3436109)
Steven Deeks (3436106)
Nicolas Chomont (175516)
Jean-Pierre Routy (118465)
Petronela Ancuta (93066)

August 2016

Additional file 1. Purity of flow cytometry-sorted memory CD4+ T-cell subsets. Total CD4+ T-cells we...

MOESM3 of A CCR5+ memory subset within HIV-1-infected primary resting CD4+ T cells is permissive for replication-competent, latently infected viruses in vitro

Kazutaka Terahara (291175)
Ryutaro Iwabuchi (5280461)
Masahito Hosokawa (295783)
Yohei Nishikawa (798080)
Haruko Takeyama (295088)
Yoshimasa Takahashi (512476)
Yasuko Tsunetsugu-Yokota (264074)

April 2019

Additional file 3: Fig. S3. Data from separate experiments for the evaluation of HIV-1 binding (S3-1...

New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

Wacleche, Vanessa Sue
Goulet, Jean-Philippe
Gosselin, Annie
Monteiro, Patricia
Soudeyns, Hugo
Fromentin, Rémi
Jenabian, Mohammad-Ali
Vartanian, Shant
Deeks, Steven G
Chomont, Nicolas
Routy, Jean-Pierre
Ancuta, Petronela

December 2016

BackgroundTh17 cells are permissive to HIV-1 infection and their depletion from the gut of infected ...

Defining Differential Genetic Signatures in CXCR4- and the CCR5-Utilizing HIV-1 Co-Linear Sequences

Benjamas Aiamkitsumrit
Will Dampier
Julio Martin-garcia
Michael R. Nonnemacher
Vanessa Pirrone
Tatyana Ivanova
Wen Zhong
Evelyn Kilareski
Hazeez Aldigun
Brian Frantz
Matthew Rimbey
Adam Wojno
Shendra Passic
Jean W. Williams

August 2016

The adaptation of human immunodeficiency virus type-1 (HIV-1) to an array of physiologic niches is a...

MOESM4 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach

Abstract

Extracted data

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