Additional file 2: Table S1. of The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

Additional file 2: Table S2. of Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus

Beat Ruffner (3493772)
Maria PĂŠchy-Tarr (3493778)
Monica HĂśfte (3429443)
Guido Bloemberg (287819)
JĂźrg Grunder (3493775)
Christoph Keel (276066)
Monika Maurhofer (276067)

August 2015

BLASTp analysis of P. protegens CHA0 Fit components against completed bacterial whole genome sequenc...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: of The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Rick Masonbrink (6314540)
Tom Maier (5567603)
Usha Muppirala (3554063)
Arun Seetharam (2182762)
Etienne Lord (335670)
Parijat Juvale (6314543)
Jeremy Schmutz (172027)
Nathan Johnson (4373449)
Dmitry Korkin (274383)
Melissa Mitchum (6314546)
Benjamin Mimee (3246378)
Sebastian den Akker (6314549)
Matthew Hudson (3264081)
Andrew Severin (3554072)
Thomas Baum (406296)

February 2019

Figure S1. Contamination check with Blobtools. Circles represent scaffolds, while their colors repre...

Additional file 1: Figure S1. of The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

Stefan Roffler (3429050)
Fabrizio Menardo (3429047)
Thomas Wicker (488457)

December 2015

Distribution of identities between plant helitron RPAs and eukaryotic âcoreâ RPAs. (PDF 274 kb

Additional file 1: Table S1. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

Duangdao Wichadakul (3540737)
Noppol Kobmoo (3272499)
Supawadee Ingsriswang (3540740)
Sithichoke Tangphatsornruang (399948)
Duriya Chantasingh (3540731)
Janet Luangsa-ard (3540734)
Lily Eurwilaichitr (746491)

October 2015

The number of genes for PHI genes family identified in O. polyrhachis-furcata and nineteen other fun...

Additional file 2: Table S1. of Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity

Amir Ariff (3538421)
Michael Wise (3538409)
Charlene Kahler (3538412)
Chin Tay (3538418)
Fanny Peters (3162510)
Timothy Perkins (3538406)
Barbara Chang (3538415)

October 2015

PHAST and Virfam results for 32 M. catarrhalis prophages. 1 32 M. catarrhalis prophages were annotat...

Additional file 1: Table S1. of Classification of a new phytoplasmas subgroup 16SrII-W associated with Crotalaria witchesâ broom diseases in Oman based on multigene sequence analysis

Ali Al-Subhi (4616221)
Saskia Hogenhout (4616218)
Rashid Al-Yahyai (3337566)
Abdullah Al-Sadi (3329829)

November 2017

16S rDNA sequences of different phytoplasma strains obtained from GenBank used for phylogenetic anal...

Additional file 1: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

The ERD6-like clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Pl...

Additional file 2: of In-depth comparative analysis of malaria parasite genomes reveals protein-coding genes linked to human disease in Plasmodium falciparum genome

Xuewu Liu (457532)
Yuanyuan Wang (20181)
Jiao Liang (5162900)
Luojun Wang (5162903)
Na Qin (774536)
Ya Zhao (807581)
Gang Zhao (161405)

May 2018

Figure S1. Clusters composed of members from a single species or six species. a) Clusters comprise P...

Additional file 4: Table S3. of The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

Claudia Vicente (3564305)
Francisco Nascimento (302654)
Yoriko Ikuyo (625674)
Peter Cock (533886)
Manuel Mota (281005)
Koichi Hasegawa (186928)

April 2016

List of genes predicted to be involved in a plant-associated life-style of Serratia sp. LCN16. (PDF ...

Additional file 2: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

The INT clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Note tha...

Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Bart van de Vossenberg (438558)
BalĂĄzs Brankovics (5734778)
Hai Nguyen (211062)
Marga van Gent-Pelzer (5734760)
Donna Smith (2685370)
Kasia Dadej (5734763)
JarosĹaw Przetakiewicz (5734781)
Jan Kreuze (5734769)
Margriet Boerma (5734772)
Gerard van Leeuwen (5734775)
C. AndrĂŠ LĂŠvesque (5734784)
Theo van der Lee (3429437)

September 2018

Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny T...

Additional file 1: Table S1. of Differential expression of Spiroplasma citri surface protein genes in the plant and insect hosts

Marie-Pierre Dubrana (123897)
Laure Béven (123889)
Nathalie Arricau-Bouvery (17976)
Sybille Duret (123891)
Stéphane Claverol (276233)
Joël Renaudin (123903)
Colette Saillard (123900)

March 2016

Relative lipoprotein genes expression levels (-ΔΔCT) in graft-inoculated plants (GIP), in leafhopper...

Additional file 2: Table S2. of Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean

Shuxian Li (176926)
Omar Darwish (2592148)
Nadim Alkharouf (2592151)
Bryan Musungu (4411912)
Benjamin Matthews (3440873)

September 2017

A list of horizontal transferred genes identified in the genome of Phomopsis longicolla isolate MSPL...

Additional file 2: of Anatomy of a Neotropical insect radiation

Isaac Winkler (4963630)
Sonja Scheffer (3311484)
Matthew Lewis (275018)
Kristina Ottens (3661252)
Andrew Rasmussen (4963624)
GĂŠssica Gomes-Costa (4963648)
Luz Huerto Santillan (4963633)
Marty Condon (3261339)
Andrew Forbes (454446)

March 2018

Table S1. Blepharoneura lineages identified in the analysis, along with Genbank accession numbers an...

Additional file 2: Table S2. of Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus

Beat Ruffner (3493772)
Maria PĂŠchy-Tarr (3493778)
Monica HĂśfte (3429443)
Guido Bloemberg (287819)
JĂźrg Grunder (3493775)
Christoph Keel (276066)
Monika Maurhofer (276067)

August 2015

BLASTp analysis of P. protegens CHA0 Fit components against completed bacterial whole genome sequenc...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: of The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Rick Masonbrink (6314540)
Tom Maier (5567603)
Usha Muppirala (3554063)
Arun Seetharam (2182762)
Etienne Lord (335670)
Parijat Juvale (6314543)
Jeremy Schmutz (172027)
Nathan Johnson (4373449)
Dmitry Korkin (274383)
Melissa Mitchum (6314546)
Benjamin Mimee (3246378)
Sebastian den Akker (6314549)
Matthew Hudson (3264081)
Andrew Severin (3554072)
Thomas Baum (406296)

February 2019

Figure S1. Contamination check with Blobtools. Circles represent scaffolds, while their colors repre...

Additional file 1: Figure S1. of The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

Stefan Roffler (3429050)
Fabrizio Menardo (3429047)
Thomas Wicker (488457)

December 2015

Distribution of identities between plant helitron RPAs and eukaryotic âcoreâ RPAs. (PDF 274 kb

Additional file 1: Table S1. of Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi

Duangdao Wichadakul (3540737)
Noppol Kobmoo (3272499)
Supawadee Ingsriswang (3540740)
Sithichoke Tangphatsornruang (399948)
Duriya Chantasingh (3540731)
Janet Luangsa-ard (3540734)
Lily Eurwilaichitr (746491)

October 2015

The number of genes for PHI genes family identified in O. polyrhachis-furcata and nineteen other fun...

Additional file 2: Table S1. of Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity

Amir Ariff (3538421)
Michael Wise (3538409)
Charlene Kahler (3538412)
Chin Tay (3538418)
Fanny Peters (3162510)
Timothy Perkins (3538406)
Barbara Chang (3538415)

October 2015

PHAST and Virfam results for 32 M. catarrhalis prophages. 1 32 M. catarrhalis prophages were annotat...

Additional file 1: Table S1. of Classification of a new phytoplasmas subgroup 16SrII-W associated with Crotalaria witchesâ broom diseases in Oman based on multigene sequence analysis

Ali Al-Subhi (4616221)
Saskia Hogenhout (4616218)
Rashid Al-Yahyai (3337566)
Abdullah Al-Sadi (3329829)

November 2017

16S rDNA sequences of different phytoplasma strains obtained from GenBank used for phylogenetic anal...

Additional file 1: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

The ERD6-like clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Pl...

Additional file 2: of In-depth comparative analysis of malaria parasite genomes reveals protein-coding genes linked to human disease in Plasmodium falciparum genome

Xuewu Liu (457532)
Yuanyuan Wang (20181)
Jiao Liang (5162900)
Luojun Wang (5162903)
Na Qin (774536)
Ya Zhao (807581)
Gang Zhao (161405)

May 2018

Figure S1. Clusters composed of members from a single species or six species. a) Clusters comprise P...

Additional file 4: Table S3. of The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

Claudia Vicente (3564305)
Francisco Nascimento (302654)
Yoriko Ikuyo (625674)
Peter Cock (533886)
Manuel Mota (281005)
Koichi Hasegawa (186928)

April 2016

List of genes predicted to be involved in a plant-associated life-style of Serratia sp. LCN16. (PDF ...

Additional file 2: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

The INT clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Note tha...

Additional file 2: of The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen

Bart van de Vossenberg (438558)
BalĂĄzs Brankovics (5734778)
Hai Nguyen (211062)
Marga van Gent-Pelzer (5734760)
Donna Smith (2685370)
Kasia Dadej (5734763)
JarosĹaw Przetakiewicz (5734781)
Jan Kreuze (5734769)
Margriet Boerma (5734772)
Gerard van Leeuwen (5734775)
C. AndrĂŠ LĂŠvesque (5734784)
Theo van der Lee (3429437)

September 2018

Table S1. mitogenomes and mitochondrial genes included in the Bayesian inference (BI) of phylogeny T...

Additional file 1: Table S1. of Differential expression of Spiroplasma citri surface protein genes in the plant and insect hosts

Marie-Pierre Dubrana (123897)
Laure Béven (123889)
Nathalie Arricau-Bouvery (17976)
Sybille Duret (123891)
Stéphane Claverol (276233)
Joël Renaudin (123903)
Colette Saillard (123900)

March 2016

Relative lipoprotein genes expression levels (-ΔΔCT) in graft-inoculated plants (GIP), in leafhopper...

Additional file 2: Table S2. of Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean

Shuxian Li (176926)
Omar Darwish (2592148)
Nadim Alkharouf (2592151)
Bryan Musungu (4411912)
Benjamin Matthews (3440873)

September 2017

A list of horizontal transferred genes identified in the genome of Phomopsis longicolla isolate MSPL...

Additional file 2: of Anatomy of a Neotropical insect radiation

Isaac Winkler (4963630)
Sonja Scheffer (3311484)
Matthew Lewis (275018)
Kristina Ottens (3661252)
Andrew Rasmussen (4963624)
GĂŠssica Gomes-Costa (4963648)
Luz Huerto Santillan (4963633)
Marty Condon (3261339)
Andrew Forbes (454446)

March 2018

Table S1. Blepharoneura lineages identified in the analysis, along with Genbank accession numbers an...

Additional file 2: Table S2. of Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus

Beat Ruffner (3493772)
Maria PĂŠchy-Tarr (3493778)
Monica HĂśfte (3429443)
Guido Bloemberg (287819)
JĂźrg Grunder (3493775)
Christoph Keel (276066)
Monika Maurhofer (276067)

August 2015

BLASTp analysis of P. protegens CHA0 Fit components against completed bacterial whole genome sequenc...

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: of The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Rick Masonbrink (6314540)
Tom Maier (5567603)
Usha Muppirala (3554063)
Arun Seetharam (2182762)
Etienne Lord (335670)
Parijat Juvale (6314543)
Jeremy Schmutz (172027)
Nathan Johnson (4373449)
Dmitry Korkin (274383)
Melissa Mitchum (6314546)
Benjamin Mimee (3246378)
Sebastian den Akker (6314549)
Matthew Hudson (3264081)
Andrew Severin (3554072)
Thomas Baum (406296)

February 2019

Figure S1. Contamination check with Blobtools. Circles represent scaffolds, while their colors repre...

Additional file 2: Table S1. of The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

Abstract

Extracted data

Additional file 2: Table S1. of The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants

Abstract

Extracted data

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