Additional file 3: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Additional file 4: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S3. Manhattan plots for genome-wide association of drought-related traits with SNP markers fo...

Additional file 3: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S2. Correlations between traits in the indica and japonica subpanels. RWC_T0, relative water ...

Additional file 3: Table S2. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

Isaiah Pabuayon (3411146)
Naoki Yamamoto (200072)
Jennylyn Trinidad (2577034)
Toshisangba Longkumer (3411143)
Manish Raorane (3411149)
Ajay Kohli (3411152)

July 2016

Weighted rank score of gene members of commonly used reference gene families. (XLSX 18 kb

Additional file 6: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications as well as the significant GO terms of up- and down-regulated differentially ...

Additional file 14: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

List of genes with selected motifs and enriched TF sites in the promoter region of the up-regulated ...

Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications and the significant GO terms of up- and down-regulated differentially express...

Additional file 2: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The complete list of differentially expressed genes (DEGs) in different clusters in rice genotypes a...

Additional file 1: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

Morphological and physiological traits and grain yield of IR64 introgressed NILs under drought-stres...

Additional file 13: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

List of regulatory motifs in the promoters of the differentially expressed specific genes and their ...

Additional file 3: Table S2. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

List of up- and down-regulated differentially expressed genes (DEGs) (|fold change| ≥ 1.5, and p val...

Additional file 11: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The molecular functions of the up-regulated DESGs in the leaves compared to the roots in two DTNs un...

Additional file 5: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

GO analysis of the down-regulated differentially expressed common genes in the leaves of the rice ge...

Additional file 12: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The molecular functions of down-regulated DESGs in the leaves compared to roots in the two DTNs unde...

Additional file 4: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

GO analysis of up-regulated differentially expressed common genes in the leaves of the rice genotype...

Additional file 10: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

Different genes involved in ABA and calcium signaling in leaf tissue of rice NILs and the parent IR6...

Additional file 4: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S3. Manhattan plots for genome-wide association of drought-related traits with SNP markers fo...

Additional file 3: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S2. Correlations between traits in the indica and japonica subpanels. RWC_T0, relative water ...

Additional file 3: Table S2. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

Isaiah Pabuayon (3411146)
Naoki Yamamoto (200072)
Jennylyn Trinidad (2577034)
Toshisangba Longkumer (3411143)
Manish Raorane (3411149)
Ajay Kohli (3411152)

July 2016

Weighted rank score of gene members of commonly used reference gene families. (XLSX 18 kb

Additional file 6: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications as well as the significant GO terms of up- and down-regulated differentially ...

Additional file 14: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

List of genes with selected motifs and enriched TF sites in the promoter region of the up-regulated ...

Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

All GO classifications and the significant GO terms of up- and down-regulated differentially express...

Additional file 2: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The complete list of differentially expressed genes (DEGs) in different clusters in rice genotypes a...

Additional file 1: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

Morphological and physiological traits and grain yield of IR64 introgressed NILs under drought-stres...

Additional file 13: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

List of regulatory motifs in the promoters of the differentially expressed specific genes and their ...

Additional file 3: Table S2. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

List of up- and down-regulated differentially expressed genes (DEGs) (|fold change| ≥ 1.5, and p val...

Additional file 11: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The molecular functions of the up-regulated DESGs in the leaves compared to the roots in two DTNs un...

Additional file 5: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

GO analysis of the down-regulated differentially expressed common genes in the leaves of the rice ge...

Additional file 12: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

The molecular functions of down-regulated DESGs in the leaves compared to roots in the two DTNs unde...

Additional file 4: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

GO analysis of up-regulated differentially expressed common genes in the leaves of the rice genotype...

Additional file 10: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Ali Moumeni (411188)
Kouji Satoh (55962)
Ramiah Venuprasad (3523856)
Rachid Serraj (276294)
Arvind Kumar (227201)
Hei Leung (93614)
Shoshi Kikuchi (55968)

December 2015

Different genes involved in ABA and calcium signaling in leaf tissue of rice NILs and the parent IR6...

Additional file 4: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S3. Manhattan plots for genome-wide association of drought-related traits with SNP markers fo...

Additional file 3: of Genome-wide Association Study of a Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase

Giang Hoang (3471803)
Lam Van Dinh (6279659)
Thom Nguyen (6279662)
Nhung Ta (6279665)
Floran Gathignol (6279668)
Chung Mai (3471794)
Stefan Jouannic (6279671)
Khanh Tran (2128105)
Trung Khuat (6279674)
Vinh Do (3471797)
Michel Lebrun (6279677)
Brigitte Courtois (68582)
Pascal Gantet (209330)

January 2019

Figure S2. Correlations between traits in the indica and japonica subpanels. RWC_T0, relative water ...

Additional file 3: Table S2. of Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance

Isaiah Pabuayon (3411146)
Naoki Yamamoto (200072)
Jennylyn Trinidad (2577034)
Toshisangba Longkumer (3411143)
Manish Raorane (3411149)
Ajay Kohli (3411152)

July 2016

Weighted rank score of gene members of commonly used reference gene families. (XLSX 18 kb

Additional file 3: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Abstract

Extracted data

Additional file 3: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

Abstract

Extracted data

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