Additional File 11:

Additional file 11: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

Godai Suzuki (4865038)
Yang Wang (5921)
Karen Kubo (4865041)
Eri Hirata (4246522)
Shinsuke Ohnuki (250332)
Yoshikazu Ohya (10098)

February 2018

Figure S9. Fractions of genes with unknown function. Each bar indicates the fraction of genes with u...

Additional file 8: of Alternative polyadenylation factors link cell cycle to migration

Mithun Mitra (2792155)
Elizabeth Johnson (11779)
Vinay Swamy (5899073)
Lois Nersesian (5899076)
David Corney (34981)
David Robinson (73947)
Daniel Taylor (486337)
Aaron Ambrus (5899079)
David Jelinek (4248520)
Wei Wang (17594)
Sandra Batista (5899082)
Hilary Coller (3706831)

October 2018

Polyadenylation site use with quiescence for genes with more than two polyadenylation sites. (XLSX 5...

Additional file 6: of A map of gene expression in neutrophil-like cell lines

Esther Rincรณn (5581481)
Briana Rocha-Gregg (5581484)
Sean Collins (11278)

August 2018

Full tables of reanalyzed gene expression data for primary neutrophils and HL-60 cells from previous...

Additional file 10: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

This Additional File is an Excel File containing 6 spreadsheets (Additional Tables 4–9) with the res...

Additional file 11: of Regulatory network changes between cell lines and their tissues of origin

Camila Lopes-Ramos (4431487)
Joseph Paulson (3495965)
Cho-Yi Chen (4431490)
Marieke Kuijjer (3553085)
Maud Fagny (3470801)
John Platig (3115692)
Abhijeet Sonawane (4431484)
Dawn DeMeo (3115695)
John Quackenbush (1213)
Kimberly Glass (416881)

September 2017

List of genes in the KEGG cell cycle pathway that are found expressed in our data set. (XLSX 27Â kb

Additional file 13: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

This Additional File is an Excel File containing 2 spreadsheets (Additional Tables 18 and 19) indica...

Additional file 1 of Identification of genetic variants that impact gene co-expression relationships using large-scale single-cell data

Li, Shuang
Schmid, Katharina T.
de Vries, Dylan H.
Korshevniuk, Maryna
Losert, Corinna
Oelen, Roy
van Blokland, Irene V.
Groot, Hilde E.
Swertz, Morris A.
van der Harst, Pim
Westra, Harm-Jan
van der Wijst, Monique G.P.
Heinig, Matthias
Franke, Lude
Faculteit Medische Wetenschappen/UMCG
University of Groningen
Wellcome Sanger Institute
University Medical Center Groningen
Institute of Epidemiology 2
Technical University of Munich
Arctic Centre, Univ. of Groningen
University Medical Center Utrecht
DZHK (German Centre for Cardiovascular Research), Partner site Greifswald

January 2023

Additional file 1: Supplementary Tables. Collection of small supplementary tables (S1-2,4-5,7-8,11-1...

Additional file 2: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

CRISPR models. Excel table containing statistically significant predictive models found using the CR...

Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

RNAi models. Excel table containing statistically significant predictive models found using the RNAi...

Additional file 10: of A map of gene expression in neutrophil-like cell lines

Esther RincĂłn (5581499)
Briana Rocha-Gregg (5581484)
Sean Collins (11278)

August 2018

Summary of enriched gene annotations for the set of genes upregulated in the presence of Nutridoma. ...

Additional file 3 of Multiâomic analysis of signalling factors in inflammatory comorbidities

Hui Xiao (185054)
Krzysztof Bartoszek (3316341)
Pietro Lioâ (3408890)

November 2018

Significant genes for the inflammatory diseases analysed in Step 1. Tables in the Excel file show ge...

Additional file 3 of An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease

Daniele Muraro (248151)
Alison Simmons (221381)

January 2016

Supplementary_Workbook.xls — Excel workbook comprising the interaction networks described in the mai...

Additional file 1: of Multilevel genomics of colorectal cancers with microsatellite instabilityâclinical impact of JAK1 mutations and consensus molecular subtype 1

Anita Sveen (207182)
Bjarne Johannessen (4046060)
Torstein Tengs (248216)
Stine Danielsen (4046051)
Ina Eilertsen (4046048)
Guro Lind (4046042)
Kaja Berg (4046057)
Edward Leithe (3116385)
Leonardo Meza-Zepeda (3537899)
Enric Domingo (225150)
Ola Myklebost (123307)
David Kerr (3529253)
Ian Tomlinson (146463)
Arild Nesbakken (207185)
Rolf Skotheim (4046054)
Ragnhild Lothe (4046045)

May 2017

Supplementary Tables. An Excel file containing Supplementary Tables S1-S12. (XLSX 8497 kb

Additional file 1: Table S1. of Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism

Valery Veprinskiy (3698401)
Leonhard Heizinger (3478760)
Maximilian Plach (3698398)
Rainer Merkl (3117)

January 2017

Table in Excel format listing the occurrence of EC numbers, EC subclasses, and of EC subdivisions in...

Additional file 1: of Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction

Alex Genshaft (3485744)
Shuqiang Li (228142)
Caroline Gallant (3485738)
Spyros Darmanis (203309)
Sanjay Prakadan (3485741)
Carly Ziegler (3485747)
Martin Lundberg (584387)
Simon Fredriksson (29917)
Joyce Hong (3485750)
Aviv Regev (147110)
Kenneth Livak (3485735)
Ulf Landegren (7959)
Alex Shalek (3424427)

September 2016

Supplementary Table. Supplementary tables with legends in the first sheet called "Supplementary Tabl...

Additional file 11: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

Godai Suzuki (4865038)
Yang Wang (5921)
Karen Kubo (4865041)
Eri Hirata (4246522)
Shinsuke Ohnuki (250332)
Yoshikazu Ohya (10098)

February 2018

Figure S9. Fractions of genes with unknown function. Each bar indicates the fraction of genes with u...

Additional file 8: of Alternative polyadenylation factors link cell cycle to migration

Mithun Mitra (2792155)
Elizabeth Johnson (11779)
Vinay Swamy (5899073)
Lois Nersesian (5899076)
David Corney (34981)
David Robinson (73947)
Daniel Taylor (486337)
Aaron Ambrus (5899079)
David Jelinek (4248520)
Wei Wang (17594)
Sandra Batista (5899082)
Hilary Coller (3706831)

October 2018

Polyadenylation site use with quiescence for genes with more than two polyadenylation sites. (XLSX 5...

Additional file 6: of A map of gene expression in neutrophil-like cell lines

Esther Rincรณn (5581481)
Briana Rocha-Gregg (5581484)
Sean Collins (11278)

August 2018

Full tables of reanalyzed gene expression data for primary neutrophils and HL-60 cells from previous...

Additional file 10: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

This Additional File is an Excel File containing 6 spreadsheets (Additional Tables 4–9) with the res...

Additional file 11: of Regulatory network changes between cell lines and their tissues of origin

Camila Lopes-Ramos (4431487)
Joseph Paulson (3495965)
Cho-Yi Chen (4431490)
Marieke Kuijjer (3553085)
Maud Fagny (3470801)
John Platig (3115692)
Abhijeet Sonawane (4431484)
Dawn DeMeo (3115695)
John Quackenbush (1213)
Kimberly Glass (416881)

September 2017

List of genes in the KEGG cell cycle pathway that are found expressed in our data set. (XLSX 27Â kb

Additional file 13: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

This Additional File is an Excel File containing 2 spreadsheets (Additional Tables 18 and 19) indica...

Additional file 1 of Identification of genetic variants that impact gene co-expression relationships using large-scale single-cell data

Li, Shuang
Schmid, Katharina T.
de Vries, Dylan H.
Korshevniuk, Maryna
Losert, Corinna
Oelen, Roy
van Blokland, Irene V.
Groot, Hilde E.
Swertz, Morris A.
van der Harst, Pim
Westra, Harm-Jan
van der Wijst, Monique G.P.
Heinig, Matthias
Franke, Lude
Faculteit Medische Wetenschappen/UMCG
University of Groningen
Wellcome Sanger Institute
University Medical Center Groningen
Institute of Epidemiology 2
Technical University of Munich
Arctic Centre, Univ. of Groningen
University Medical Center Utrecht
DZHK (German Centre for Cardiovascular Research), Partner site Greifswald

January 2023

Additional file 1: Supplementary Tables. Collection of small supplementary tables (S1-2,4-5,7-8,11-1...

Additional file 2: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

CRISPR models. Excel table containing statistically significant predictive models found using the CR...

Additional file 1: of Inferring cancer dependencies on metabolic genes from large-scale genetic screens

Shoval Lagziel (6652664)
Won Lee (3554000)
Tomer Shlomi (22999)

April 2019

RNAi models. Excel table containing statistically significant predictive models found using the RNAi...

Additional file 10: of A map of gene expression in neutrophil-like cell lines

Esther RincĂłn (5581499)
Briana Rocha-Gregg (5581484)
Sean Collins (11278)

August 2018

Summary of enriched gene annotations for the set of genes upregulated in the presence of Nutridoma. ...

Additional file 3 of Multiâomic analysis of signalling factors in inflammatory comorbidities

Hui Xiao (185054)
Krzysztof Bartoszek (3316341)
Pietro Lioâ (3408890)

November 2018

Significant genes for the inflammatory diseases analysed in Step 1. Tables in the Excel file show ge...

Additional file 3 of An integrative analysis of gene expression and molecular interaction data to identify dys-regulated sub-networks in inflammatory bowel disease

Daniele Muraro (248151)
Alison Simmons (221381)

January 2016

Supplementary_Workbook.xls — Excel workbook comprising the interaction networks described in the mai...

Additional file 1: of Multilevel genomics of colorectal cancers with microsatellite instabilityâclinical impact of JAK1 mutations and consensus molecular subtype 1

Anita Sveen (207182)
Bjarne Johannessen (4046060)
Torstein Tengs (248216)
Stine Danielsen (4046051)
Ina Eilertsen (4046048)
Guro Lind (4046042)
Kaja Berg (4046057)
Edward Leithe (3116385)
Leonardo Meza-Zepeda (3537899)
Enric Domingo (225150)
Ola Myklebost (123307)
David Kerr (3529253)
Ian Tomlinson (146463)
Arild Nesbakken (207185)
Rolf Skotheim (4046054)
Ragnhild Lothe (4046045)

May 2017

Supplementary Tables. An Excel file containing Supplementary Tables S1-S12. (XLSX 8497 kb

Additional file 1: Table S1. of Assessing in silico the recruitment and functional spectrum of bacterial enzymes from secondary metabolism

Valery Veprinskiy (3698401)
Leonhard Heizinger (3478760)
Maximilian Plach (3698398)
Rainer Merkl (3117)

January 2017

Table in Excel format listing the occurrence of EC numbers, EC subclasses, and of EC subdivisions in...

Additional file 1: of Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction

Alex Genshaft (3485744)
Shuqiang Li (228142)
Caroline Gallant (3485738)
Spyros Darmanis (203309)
Sanjay Prakadan (3485741)
Carly Ziegler (3485747)
Martin Lundberg (584387)
Simon Fredriksson (29917)
Joyce Hong (3485750)
Aviv Regev (147110)
Kenneth Livak (3485735)
Ulf Landegren (7959)
Alex Shalek (3424427)

September 2016

Supplementary Table. Supplementary tables with legends in the first sheet called "Supplementary Tabl...

Additional file 11: of Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae

Godai Suzuki (4865038)
Yang Wang (5921)
Karen Kubo (4865041)
Eri Hirata (4246522)
Shinsuke Ohnuki (250332)
Yoshikazu Ohya (10098)

February 2018

Figure S9. Fractions of genes with unknown function. Each bar indicates the fraction of genes with u...

Additional file 8: of Alternative polyadenylation factors link cell cycle to migration

Mithun Mitra (2792155)
Elizabeth Johnson (11779)
Vinay Swamy (5899073)
Lois Nersesian (5899076)
David Corney (34981)
David Robinson (73947)
Daniel Taylor (486337)
Aaron Ambrus (5899079)
David Jelinek (4248520)
Wei Wang (17594)
Sandra Batista (5899082)
Hilary Coller (3706831)

October 2018

Polyadenylation site use with quiescence for genes with more than two polyadenylation sites. (XLSX 5...

Additional file 6: of A map of gene expression in neutrophil-like cell lines

Esther Rincรณn (5581481)
Briana Rocha-Gregg (5581484)
Sean Collins (11278)

August 2018

Full tables of reanalyzed gene expression data for primary neutrophils and HL-60 cells from previous...

Additional File 11:

Abstract

Extracted data

Additional File 11:

Abstract

Extracted data

Related items

Related items