Additional file 3: Table S3. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Additional file 1: of Epigenetically maintained SW13+ and SW13- subtypes have different oncogenic potential and convert with HDAC1 inhibition

McKale Davis (3449099)
Juliane Daggett (3449111)
Agnes Pascual (3449105)
Jessica Lam (3449108)
Kathryn Leyva (3449102)
Kimbal Cooper (3449093)
Elizabeth Hull (3449096)

May 2016

Human Epigenetic Chromatin Modification Enzymes and Epigenetic Chromatin Remodeling Factors RT2 Prof...

Original Article Histone Modification of Embryonic Stem Cells Produced by Somatic Cell Nuclear Transfer and Fertilized Blastocysts

Fattaneh Farifteh
Ph. D
Mohammad Salehi
Ph. D
Mojgan B
Ph. D
Ph. D
Marefat Ghafari Novin
Ph. D
Taher Hosseini
B. Sc
Sedigheh Nematollahi
M. Sc
Mohsen Noroozian
Ph. D
Somayeh Keshavarzi
M. Sc
Ahmad Hosseini
Ph. D

September 2016

Objective: Nuclear transfer-embryonic stem cells (NT-ESCs) are genetically identical to the donor’s ...

Additional file 2: Figure S3. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

Akihiro Kuno (4733382)
Ken Nishimura (445291)
Satoru Takahashi (32871)

January 2018

Epigenetic modification during reprogramming. (a) Gene expression patterns during reprogramming in f...

Additional file 2: Table S2. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-AndrĂŠ Sirard (3465899)

January 2016

CTR-NT Differentially regulated genes. Breakdown of genes differentially up and downregulated with â...

Additional file 1: Table S1. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-AndrĂŠ Sirard (3465899)

January 2016

Pre- and post- implantation development. Effect of TSA treatment on in vitro and in vivo development...

Additional file 7: Table S6. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

GO terms emerged from TSA-NT blastocyst. Gene ontology terms emerged from the differentially regulat...

Additional file 6: Table S5. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

GO terms emerged from CTR-NT blastocyst. Gene ontology terms emerged from the differentially regulat...

Additional file 9: Table S8. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

qRT-PCR primers. Sequences (5′–3′) of reverse transcription qRT-PCR-specific primers for candidate g...

Additional file 5: Figure S1. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

Nascent RNA expression in CTR-NT and TSA-NT blastocysts. A-E’) Investigation of nascent RNA expressi...

Extended exposure to trichostatin A after activation alters the expression of genes important for early development in nuclear transfer murine embryos

Kang, Hoin
Roh, Sangho

January 2011

The low viability of embryos reconstructed by somatic cell nuclear transfer (SCNT) is believed to be...

Extended Exposure to Trichostatin A after Activation Alters the Expression of Genes Important for Early Development in Nuclear Transfer Murine Embryos

Kang, Hoin
Roh, Sangho

May 2011

The low viability of embryos reconstructed by somatic cell nuclear transfer (SCNT) is believed to be...

Additional file 3: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

Yong Liu (6908)
Fengrui Wu (5639615)
Ling Zhang (18071)
Xiaoqing Wu (788978)
Dengkun Li (5639618)
Jing Xin (183453)
Juan Xie (461923)
Feng Kong (459884)
Wenying Wang (187565)
Qiaoqin Wu (5846117)
Di Zhang (197959)
Rong Wang (59795)
Shaorong Gao (249898)
Wenyong Li (715719)

October 2018

List of different genes between NT groups and Invivo group. Two group Ensembl gene IDs were listed. ...

Additional file 3: Table S3. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

Sonia Heras (3541301)
Dieter De Coninck (1677397)
Mario Van Poucke (21805)
Karen Goossens (21806)
Osvaldo Bogado Pascottini (3541304)
Filip Van Nieuwerburgh (20881)
Dieter Deforce (20882)
Petra De Sutter (3541298)
Jo Leroy (3541295)
Alfonso Gutierrez-Adan (209148)
Luc Peelman (2058154)
Ann Van Soom (75881)

January 2016

Lists of the genes differentially expressed in all the comparisons (including all the fold-changes),...

Additional file 1: of The epigenetic regulation of HsMar1, a human DNA transposon

Sylvaine Renault (261575)
Murielle Genty (311750)
Alison Gabori (6339800)
Catherine Boisneau (6339803)
Charles Esnault (2386333)
Thomas DugĂŠ de Bernonville (6339806)
Corinne AugĂŠ-Gouillou (6339809)

February 2019

Data S1. Recombinant HsMar1 insertion sites in HeLa and CHO cell lines. Data S2. Inter-plasmidic act...

Additional file 1: Figure S1. of The histone deacetylase inhibitor trichostatin a decreases lymphangiogenesis by inducing apoptosis and cell cycle arrest via p21-dependent pathways

Igor Hrgovic (3430676)
Monika Doll (3430682)
Johannes Kleemann (764576)
Xiao-Fan Wang (155424)
Nadja Zoeller (3430673)
Andreas Pinter (3430679)
Stefan Kippenberger (481792)
Roland Kaufmann (481793)
Markus Meissner (244917)

September 2016

Effects of TSA on important cell cycle regulators. Densitometric analysis of Western blots. TSA indu...

Additional file 1: of Epigenetically maintained SW13+ and SW13- subtypes have different oncogenic potential and convert with HDAC1 inhibition

McKale Davis (3449099)
Juliane Daggett (3449111)
Agnes Pascual (3449105)
Jessica Lam (3449108)
Kathryn Leyva (3449102)
Kimbal Cooper (3449093)
Elizabeth Hull (3449096)

May 2016

Human Epigenetic Chromatin Modification Enzymes and Epigenetic Chromatin Remodeling Factors RT2 Prof...

Original Article Histone Modification of Embryonic Stem Cells Produced by Somatic Cell Nuclear Transfer and Fertilized Blastocysts

Fattaneh Farifteh
Ph. D
Mohammad Salehi
Ph. D
Mojgan B
Ph. D
Ph. D
Marefat Ghafari Novin
Ph. D
Taher Hosseini
B. Sc
Sedigheh Nematollahi
M. Sc
Mohsen Noroozian
Ph. D
Somayeh Keshavarzi
M. Sc
Ahmad Hosseini
Ph. D

September 2016

Objective: Nuclear transfer-embryonic stem cells (NT-ESCs) are genetically identical to the donor’s ...

Additional file 2: Figure S3. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

Akihiro Kuno (4733382)
Ken Nishimura (445291)
Satoru Takahashi (32871)

January 2018

Epigenetic modification during reprogramming. (a) Gene expression patterns during reprogramming in f...

Additional file 2: Table S2. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-AndrĂŠ Sirard (3465899)

January 2016

CTR-NT Differentially regulated genes. Breakdown of genes differentially up and downregulated with â...

Additional file 1: Table S1. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-AndrĂŠ Sirard (3465899)

January 2016

Pre- and post- implantation development. Effect of TSA treatment on in vitro and in vivo development...

Additional file 7: Table S6. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

GO terms emerged from TSA-NT blastocyst. Gene ontology terms emerged from the differentially regulat...

Additional file 6: Table S5. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

GO terms emerged from CTR-NT blastocyst. Gene ontology terms emerged from the differentially regulat...

Additional file 9: Table S8. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

qRT-PCR primers. Sequences (5′–3′) of reverse transcription qRT-PCR-specific primers for candidate g...

Additional file 5: Figure S1. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Sayyed Hosseini (3465875)
Isabelle Dufort (3465890)
Julie Nieminen (3465872)
Fariba Moulavi (2587045)
Hamid Ghanaei (3465896)
Mahdi Hajian (3465884)
Farnoosh Jafarpour (3465881)
Mohsen Forouzanfar (3465893)
Hamid Gourbai (3465869)
Abdol Shahverdi (3465887)
Mohammad Nasr-Esfahani (3465878)
Marc-André Sirard (79380)

January 2016

Nascent RNA expression in CTR-NT and TSA-NT blastocysts. A-E’) Investigation of nascent RNA expressi...

Extended exposure to trichostatin A after activation alters the expression of genes important for early development in nuclear transfer murine embryos

Kang, Hoin
Roh, Sangho

January 2011

The low viability of embryos reconstructed by somatic cell nuclear transfer (SCNT) is believed to be...

Extended Exposure to Trichostatin A after Activation Alters the Expression of Genes Important for Early Development in Nuclear Transfer Murine Embryos

Kang, Hoin
Roh, Sangho

May 2011

The low viability of embryos reconstructed by somatic cell nuclear transfer (SCNT) is believed to be...

Additional file 3: of Transcriptional defects and reprogramming barriers in somatic cell nuclear reprogramming as revealed by single-embryo RNA sequencing

Yong Liu (6908)
Fengrui Wu (5639615)
Ling Zhang (18071)
Xiaoqing Wu (788978)
Dengkun Li (5639618)
Jing Xin (183453)
Juan Xie (461923)
Feng Kong (459884)
Wenying Wang (187565)
Qiaoqin Wu (5846117)
Di Zhang (197959)
Rong Wang (59795)
Shaorong Gao (249898)
Wenyong Li (715719)

October 2018

List of different genes between NT groups and Invivo group. Two group Ensembl gene IDs were listed. ...

Additional file 3: Table S3. of Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

Sonia Heras (3541301)
Dieter De Coninck (1677397)
Mario Van Poucke (21805)
Karen Goossens (21806)
Osvaldo Bogado Pascottini (3541304)
Filip Van Nieuwerburgh (20881)
Dieter Deforce (20882)
Petra De Sutter (3541298)
Jo Leroy (3541295)
Alfonso Gutierrez-Adan (209148)
Luc Peelman (2058154)
Ann Van Soom (75881)

January 2016

Lists of the genes differentially expressed in all the comparisons (including all the fold-changes),...

Additional file 1: of The epigenetic regulation of HsMar1, a human DNA transposon

Sylvaine Renault (261575)
Murielle Genty (311750)
Alison Gabori (6339800)
Catherine Boisneau (6339803)
Charles Esnault (2386333)
Thomas DugĂŠ de Bernonville (6339806)
Corinne AugĂŠ-Gouillou (6339809)

February 2019

Data S1. Recombinant HsMar1 insertion sites in HeLa and CHO cell lines. Data S2. Inter-plasmidic act...

Additional file 1: Figure S1. of The histone deacetylase inhibitor trichostatin a decreases lymphangiogenesis by inducing apoptosis and cell cycle arrest via p21-dependent pathways

Igor Hrgovic (3430676)
Monika Doll (3430682)
Johannes Kleemann (764576)
Xiao-Fan Wang (155424)
Nadja Zoeller (3430673)
Andreas Pinter (3430679)
Stefan Kippenberger (481792)
Roland Kaufmann (481793)
Markus Meissner (244917)

September 2016

Effects of TSA on important cell cycle regulators. Densitometric analysis of Western blots. TSA indu...

Additional file 1: of Epigenetically maintained SW13+ and SW13- subtypes have different oncogenic potential and convert with HDAC1 inhibition

McKale Davis (3449099)
Juliane Daggett (3449111)
Agnes Pascual (3449105)
Jessica Lam (3449108)
Kathryn Leyva (3449102)
Kimbal Cooper (3449093)
Elizabeth Hull (3449096)

May 2016

Human Epigenetic Chromatin Modification Enzymes and Epigenetic Chromatin Remodeling Factors RT2 Prof...

Original Article Histone Modification of Embryonic Stem Cells Produced by Somatic Cell Nuclear Transfer and Fertilized Blastocysts

Fattaneh Farifteh
Ph. D
Mohammad Salehi
Ph. D
Mojgan B
Ph. D
Ph. D
Marefat Ghafari Novin
Ph. D
Taher Hosseini
B. Sc
Sedigheh Nematollahi
M. Sc
Mohsen Noroozian
Ph. D
Somayeh Keshavarzi
M. Sc
Ahmad Hosseini
Ph. D

September 2016

Objective: Nuclear transfer-embryonic stem cells (NT-ESCs) are genetically identical to the donor’s ...

Additional file 2: Figure S3. of Time-course transcriptome analysis of human cellular reprogramming from multiple cell types reveals the drastic change occurs between the mid phase and the late phase

Akihiro Kuno (4733382)
Ken Nishimura (445291)
Satoru Takahashi (32871)

January 2018

Epigenetic modification during reprogramming. (a) Gene expression patterns during reprogramming in f...

Additional file 3: Table S3. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Abstract

Extracted data

Additional file 3: Table S3. of Epigenetic modification with trichostatin A does not correct specific errors of somatic cell nuclear transfer at the transcriptomic level; highlighting the non-random nature of oocyte-mediated reprogramming errors

Abstract

Extracted data

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