Additional file 4: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 8: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Fengjie Yuan (3664984)
Xiaomin Yu (39962)
Dekun Dong (2548249)
Qinghua Yang (606019)
Xujun Fu (3664990)
Shenlong Zhu (3664987)
Danhua Zhu (2162089)

January 2017

Most differentially expressed genes identified by analysis of DEGs in TW-1-M relative to TW-1. (XLSX...

Additional file 2: Table S2. of Small RNA profiles in soybean primary root tips under water deficit

Yun Zheng (44934)
Vandana Hivrale (3443063)
Xiaotuo Zhang (3443066)
Babu Valliyodan (131241)
Christine Lelandais-BriĂ¨re (3443060)
Andrew Farmer (6125)
Gregory May (271487)
Martin Crespi (231072)
Henry Nguyen (493314)
Ramanjulu Sunkar (44933)

December 2016

The normalized abundances of miRNA families in control and water-stressed roots tips of soybean. (XL...

Additional file 5: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ethylene synthesis and the response pathway. (XLSX 15 kb

Additional file 6: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ABA synthesis and the response pathway. (XLSX 10 kb

Additional file 3: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis for carbohydrate metabolism. (XLSX 12 kb

Additional file 10: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list and expression patterns for all transcription factors involved in all tissues and stre...

Additional file 9: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list of changed transcription factors in roots under MS and SS treatments. (XLSX 18 kb

Additional file 13: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene information used for qRT-PCR verification of RNA-Seq data and corresponding expression patterns...

Additional file 12: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

High correlation between RNA-Seq data (X axis) and qRT-PCR data (y axis) using the log2 values for d...

Additional file 8: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The regulated transcription factor (TFs) number list for different tissues and water-deficit treatme...

Additional file 11: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Enriched motif analysis in each group involved in roots and different stress levels. The DREAM tool ...

Additional file 4: of Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

Neelam Redekar (3503201)
Ruslan Biyashev (1486219)
Roderick Jensen (1598134)
Richard Helm (336251)
Elizabeth Grabau (3503204)
M. Maroof (3503207)

December 2015

Photosynthesis related genes differentially expressed in late stages of seed development. (XLSX 49Â ...

Additional file 4: of Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

Chenglin Chai (45748)
Yongqin Wang (515167)
Trupti Joshi (51047)
Babu Valliyodan (131241)
Silvas Prince (3462488)
Lydia Michel (3543893)
Dong Xu (1234428)
Henry Nguyen (493314)

August 2015

Tissue/organ expression pattern of TF genes. The expression of soybean TF-ORFeome candidates in seve...

Additional file 2: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Fengjie Yuan (3664984)
Xiaomin Yu (39962)
Dekun Dong (2548249)
Qinghua Yang (606019)
Xujun Fu (3664990)
Shenlong Zhu (3664987)
Danhua Zhu (2162089)

January 2017

A table with the FPKM value of each soybean gene in each of the 18 libraries. (XLSX 5827 kb

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 8: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Fengjie Yuan (3664984)
Xiaomin Yu (39962)
Dekun Dong (2548249)
Qinghua Yang (606019)
Xujun Fu (3664990)
Shenlong Zhu (3664987)
Danhua Zhu (2162089)

January 2017

Most differentially expressed genes identified by analysis of DEGs in TW-1-M relative to TW-1. (XLSX...

Additional file 2: Table S2. of Small RNA profiles in soybean primary root tips under water deficit

Yun Zheng (44934)
Vandana Hivrale (3443063)
Xiaotuo Zhang (3443066)
Babu Valliyodan (131241)
Christine Lelandais-BriĂ¨re (3443060)
Andrew Farmer (6125)
Gregory May (271487)
Martin Crespi (231072)
Henry Nguyen (493314)
Ramanjulu Sunkar (44933)

December 2016

The normalized abundances of miRNA families in control and water-stressed roots tips of soybean. (XL...

Additional file 5: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ethylene synthesis and the response pathway. (XLSX 15 kb

Additional file 6: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ABA synthesis and the response pathway. (XLSX 10 kb

Additional file 3: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis for carbohydrate metabolism. (XLSX 12 kb

Additional file 10: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list and expression patterns for all transcription factors involved in all tissues and stre...

Additional file 9: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list of changed transcription factors in roots under MS and SS treatments. (XLSX 18 kb

Additional file 13: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene information used for qRT-PCR verification of RNA-Seq data and corresponding expression patterns...

Additional file 12: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

High correlation between RNA-Seq data (X axis) and qRT-PCR data (y axis) using the log2 values for d...

Additional file 8: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The regulated transcription factor (TFs) number list for different tissues and water-deficit treatme...

Additional file 11: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Enriched motif analysis in each group involved in roots and different stress levels. The DREAM tool ...

Additional file 4: of Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

Neelam Redekar (3503201)
Ruslan Biyashev (1486219)
Roderick Jensen (1598134)
Richard Helm (336251)
Elizabeth Grabau (3503204)
M. Maroof (3503207)

December 2015

Photosynthesis related genes differentially expressed in late stages of seed development. (XLSX 49Â ...

Additional file 4: of Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

Chenglin Chai (45748)
Yongqin Wang (515167)
Trupti Joshi (51047)
Babu Valliyodan (131241)
Silvas Prince (3462488)
Lydia Michel (3543893)
Dong Xu (1234428)
Henry Nguyen (493314)

August 2015

Tissue/organ expression pattern of TF genes. The expression of soybean TF-ORFeome candidates in seve...

Additional file 2: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Fengjie Yuan (3664984)
Xiaomin Yu (39962)
Dekun Dong (2548249)
Qinghua Yang (606019)
Xujun Fu (3664990)
Shenlong Zhu (3664987)
Danhua Zhu (2162089)

January 2017

A table with the FPKM value of each soybean gene in each of the 18 libraries. (XLSX 5827 kb

Additional file 8: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Table S6. The expression profiles (log2-based values) of the soybean bZIP genes after drought treatm...

Additional file 8: of Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Fengjie Yuan (3664984)
Xiaomin Yu (39962)
Dekun Dong (2548249)
Qinghua Yang (606019)
Xujun Fu (3664990)
Shenlong Zhu (3664987)
Danhua Zhu (2162089)

January 2017

Most differentially expressed genes identified by analysis of DEGs in TW-1-M relative to TW-1. (XLSX...

Additional file 2: Table S2. of Small RNA profiles in soybean primary root tips under water deficit

Yun Zheng (44934)
Vandana Hivrale (3443063)
Xiaotuo Zhang (3443066)
Babu Valliyodan (131241)
Christine Lelandais-BriĂ¨re (3443060)
Andrew Farmer (6125)
Gregory May (271487)
Martin Crespi (231072)
Henry Nguyen (493314)
Ramanjulu Sunkar (44933)

December 2016

The normalized abundances of miRNA families in control and water-stressed roots tips of soybean. (XL...

Additional file 4: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Abstract

Extracted data

Additional file 4: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Abstract

Extracted data

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