Additional file 5: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Additional file 1:Supplementary Figures (Figs. S1-S10). of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Figure S1.Â Soybean Chromosomal Ideogram; Figure S2. Gene Ontology Classification; Figure S3. Prote...

Additional file 5: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Cycle Threshold (C t ) (Tables S10-S11). Table S10. Target and endogenous ge...

Additional file 6: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Primers (Method S1). Gene summary and primers for Real Time PCR. (PDF 227Â k...

Additional file 4: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of auxin synthesis and the response pathway. (XLSX 11 kb

Additional file 6: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ABA synthesis and the response pathway. (XLSX 10 kb

Additional file 3: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis for carbohydrate metabolism. (XLSX 12 kb

Additional file 9: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list of changed transcription factors in roots under MS and SS treatments. (XLSX 18 kb

Additional file 10: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list and expression patterns for all transcription factors involved in all tissues and stre...

Additional file 13: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene information used for qRT-PCR verification of RNA-Seq data and corresponding expression patterns...

Additional file 12: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

High correlation between RNA-Seq data (X axis) and qRT-PCR data (y axis) using the log2 values for d...

Additional file 8: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The regulated transcription factor (TFs) number list for different tissues and water-deficit treatme...

Additional file 11: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Enriched motif analysis in each group involved in roots and different stress levels. The DREAM tool ...

Additional file 3: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

In silicoÂ Characterization of Ethylene Soybean Genes. Detailed description of characterization, gen...

Additional file 4: of Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

Neelam Redekar (3503201)
Ruslan Biyashev (1486219)
Roderick Jensen (1598134)
Richard Helm (336251)
Elizabeth Grabau (3503204)
M. Maroof (3503207)

December 2015

Photosynthesis related genes differentially expressed in late stages of seed development. (XLSX 49Â ...

Additional file 4: of Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

Chenglin Chai (45748)
Yongqin Wang (515167)
Trupti Joshi (51047)
Babu Valliyodan (131241)
Silvas Prince (3462488)
Lydia Michel (3543893)
Dong Xu (1234428)
Henry Nguyen (493314)

August 2015

Tissue/organ expression pattern of TF genes. The expression of soybean TF-ORFeome candidates in seve...

Additional file 1:Supplementary Figures (Figs. S1-S10). of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Figure S1.Â Soybean Chromosomal Ideogram; Figure S2. Gene Ontology Classification; Figure S3. Prote...

Additional file 5: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Cycle Threshold (C t ) (Tables S10-S11). Table S10. Target and endogenous ge...

Additional file 6: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Primers (Method S1). Gene summary and primers for Real Time PCR. (PDF 227Â k...

Additional file 4: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of auxin synthesis and the response pathway. (XLSX 11 kb

Additional file 6: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis of ABA synthesis and the response pathway. (XLSX 10 kb

Additional file 3: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene annotation and expression analysis for carbohydrate metabolism. (XLSX 12 kb

Additional file 9: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list of changed transcription factors in roots under MS and SS treatments. (XLSX 18 kb

Additional file 10: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The gene list and expression patterns for all transcription factors involved in all tissues and stre...

Additional file 13: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Gene information used for qRT-PCR verification of RNA-Seq data and corresponding expression patterns...

Additional file 12: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

High correlation between RNA-Seq data (X axis) and qRT-PCR data (y axis) using the log2 values for d...

Additional file 8: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

The regulated transcription factor (TFs) number list for different tissues and water-deficit treatme...

Additional file 11: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Li Song (34475)
Silvas Prince (3462488)
Babu Valliyodan (131241)
Trupti Joshi (51047)
Joao Maldonado dos Santos (3462485)
Jiaojiao Wang (541548)
Li Lin (111038)
Jinrong Wan (3462482)
Yongqin Wang (515167)
Dong Xu (1234428)
Henry Nguyen (493314)

January 2016

Enriched motif analysis in each group involved in roots and different stress levels. The DREAM tool ...

Additional file 3: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

In silicoÂ Characterization of Ethylene Soybean Genes. Detailed description of characterization, gen...

Additional file 4: of Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines

Neelam Redekar (3503201)
Ruslan Biyashev (1486219)
Roderick Jensen (1598134)
Richard Helm (336251)
Elizabeth Grabau (3503204)
M. Maroof (3503207)

December 2015

Photosynthesis related genes differentially expressed in late stages of seed development. (XLSX 49Â ...

Additional file 4: of Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

Chenglin Chai (45748)
Yongqin Wang (515167)
Trupti Joshi (51047)
Babu Valliyodan (131241)
Silvas Prince (3462488)
Lydia Michel (3543893)
Dong Xu (1234428)
Henry Nguyen (493314)

August 2015

Tissue/organ expression pattern of TF genes. The expression of soybean TF-ORFeome candidates in seve...

Additional file 1:Supplementary Figures (Figs. S1-S10). of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Figure S1.Â Soybean Chromosomal Ideogram; Figure S2. Gene Ontology Classification; Figure S3. Prote...

Additional file 5: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Cycle Threshold (C t ) (Tables S10-S11). Table S10. Target and endogenous ge...

Additional file 6: of Implications of ethylene biosynthesis and signaling in soybean drought stress tolerance

Fabricio Arraes (3580706)
Magda Beneventi (3580694)
Maria Lisei de Sa (3580700)
Joaquin Paixao (3580697)
Erika Albuquerque (3580688)
Silvana Marin (3580691)
Eduardo Purgatto (1948921)
Alexandre Nepomuceno (514830)
Maria Grossi-de-Sa (3580703)

September 2015

Real Time PCR (RT-qPCR) Primers (Method S1). Gene summary and primers for Real Time PCR. (PDF 227Â k...

Additional file 5: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Abstract

Extracted data

Additional file 5: of Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions

Abstract

Extracted data

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