Additional file 4: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Additional file 6: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Table S2. Gene function enrichment analysis based on the GO annotation of DEGs. (XLSX 56 kb

Additional file 9: Table S7. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Siyuan Zhan (3308118)
Yao Dong (3308124)
Wei Zhao (14321)
Jiazhong Guo (3308121)
Tao Zhong (501589)
Linjie Wang (152532)
Li Li (14993)
Hongping Zhang (152549)

August 2016

Functional enrichment analysis of protein-coding genes co-expressed with lncRNAs. (XLSX 160 kb

Additional file 1: of Filtered reproductive long non-coding RNAs by genome-wide analyses of goat ovary at different estrus periods

Yong Liu (6908)
Bing Qi (492962)
Juan Xie (461923)
Xiaoqing Wu (788978)
Yinghui Ling (838919)
Xinyan Cao (6039290)
Feng Kong (459884)
Jing Xin (183453)
Xin Jiang (6348)
Qiaoqin Wu (5846117)
Wenying Wang (187565)
Qingmei Li (301661)
Shengnan Zhang (1340988)
Fengrui Wu (5639615)
Di Zhang (197959)
Rong Wang (59795)
Xiaorong Zhang (510884)
Wenyong Li (715719)

December 2018

Figure S1. The comparison of features of genomic characteristics between lncRNA/TUCP and mRNA. A. Th...

Additional file 5: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Functional enrichment analysis of the protein-coding genes of lncRNAs in cis. (XLS 360Â kb

Additional file 7: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Functional enrichment analysis of protein-coding genes of lncRNAs in trans. (XLS 7903Â kb

Additional file 2: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Comparison of TE components between individual subtypes of lncRNAs and mRNAs. (XLSX 17Â kb

RESEARCH ARTICLE Open Access

August 2016

Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hir...

Additional file 14: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

Shanhe Wang (4507789)
Wei Ge (39218)
Zhixin Luo (4507792)
Yang Guo (399435)
Beilei Jiao (4507786)
Lei Qu (423146)
Zhiying Zhang (68533)
Xin Wang (91924)

October 2017

Potential lncRNAs function as competing endogenous RNAs (ceRNAs) duing hair follicle cycling. (XLSX ...

Additional file 4: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S3. Characterization of the HF development-related gene expression in skin. Note: A. Number o...

Additional file 8: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Table S4. FPKM values of lincRNA which show highly expression in HF of goat. (XLSX 59 kb

Additional file 12: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

Shanhe Wang (4507789)
Wei Ge (39218)
Zhixin Luo (4507792)
Yang Guo (399435)
Beilei Jiao (4507786)
Lei Qu (423146)
Zhiying Zhang (68533)
Xin Wang (91924)

October 2017

LncRNA-protein coding gene pairs with both colocalization and correlation relationships. (XLSX 12Â k...

Additional file 2: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S1. Overview of the informatics pipeline used to the identify lincRNAs in goat. (PDF 216 kb

Additional file 5: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S4. Comparison of the expression patterns of selected lincRNAs and protein-coding genes detec...

Additional file 6: Table S4. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Siyuan Zhan (3308118)
Yao Dong (3308124)
Wei Zhao (14321)
Jiazhong Guo (3308121)
Tao Zhong (501589)
Linjie Wang (152532)
Li Li (14993)
Hongping Zhang (152549)

August 2016

Protein-coding genes detected 10-kb upstream and downstream of the differentially expressed lncRNAs....

Additional file 3: of Integrative analysis reveals ncRNA-mediated molecular regulatory network driving secondary hair follicle regression in cashmere goats

Guangxian Zhou (2558095)
Danju Kang (5022683)
Sen Ma (2558092)
Xingtao Wang (5022686)
Ye Gao (338234)
Yuxin Yang (694142)
Xiaolong Wang (20235)
Yulin Chen (284451)

March 2018

Figure S1. Raw reads classification for each sample (lncRNAs); Figure S2. Mapped region for each sam...

Additional file 6: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Table S2. Gene function enrichment analysis based on the GO annotation of DEGs. (XLSX 56 kb

Additional file 9: Table S7. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Siyuan Zhan (3308118)
Yao Dong (3308124)
Wei Zhao (14321)
Jiazhong Guo (3308121)
Tao Zhong (501589)
Linjie Wang (152532)
Li Li (14993)
Hongping Zhang (152549)

August 2016

Functional enrichment analysis of protein-coding genes co-expressed with lncRNAs. (XLSX 160 kb

Additional file 1: of Filtered reproductive long non-coding RNAs by genome-wide analyses of goat ovary at different estrus periods

Yong Liu (6908)
Bing Qi (492962)
Juan Xie (461923)
Xiaoqing Wu (788978)
Yinghui Ling (838919)
Xinyan Cao (6039290)
Feng Kong (459884)
Jing Xin (183453)
Xin Jiang (6348)
Qiaoqin Wu (5846117)
Wenying Wang (187565)
Qingmei Li (301661)
Shengnan Zhang (1340988)
Fengrui Wu (5639615)
Di Zhang (197959)
Rong Wang (59795)
Xiaorong Zhang (510884)
Wenyong Li (715719)

December 2018

Figure S1. The comparison of features of genomic characteristics between lncRNA/TUCP and mRNA. A. Th...

Additional file 5: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Functional enrichment analysis of the protein-coding genes of lncRNAs in cis. (XLS 360Â kb

Additional file 7: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Functional enrichment analysis of protein-coding genes of lncRNAs in trans. (XLS 7903Â kb

Additional file 2: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Hangxing Ren (389142)
Gaofu Wang (3538913)
Lei Chen (54296)
Jing Jiang (130103)
Liangjia Liu (3538910)
Nianfu Li (3538916)
Jinhong Zhao (3090435)
Xiaoyan Sun (28501)
Peng Zhou (116747)

January 2016

Comparison of TE components between individual subtypes of lncRNAs and mRNAs. (XLSX 17Â kb

RESEARCH ARTICLE Open Access

August 2016

Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hir...

Additional file 14: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

Shanhe Wang (4507789)
Wei Ge (39218)
Zhixin Luo (4507792)
Yang Guo (399435)
Beilei Jiao (4507786)
Lei Qu (423146)
Zhiying Zhang (68533)
Xin Wang (91924)

October 2017

Potential lncRNAs function as competing endogenous RNAs (ceRNAs) duing hair follicle cycling. (XLSX ...

Additional file 4: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S3. Characterization of the HF development-related gene expression in skin. Note: A. Number o...

Additional file 8: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Table S4. FPKM values of lincRNA which show highly expression in HF of goat. (XLSX 59 kb

Additional file 12: of Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)

Shanhe Wang (4507789)
Wei Ge (39218)
Zhixin Luo (4507792)
Yang Guo (399435)
Beilei Jiao (4507786)
Lei Qu (423146)
Zhiying Zhang (68533)
Xin Wang (91924)

October 2017

LncRNA-protein coding gene pairs with both colocalization and correlation relationships. (XLSX 12Â k...

Additional file 2: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S1. Overview of the informatics pipeline used to the identify lincRNAs in goat. (PDF 216 kb

Additional file 5: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Figure S4. Comparison of the expression patterns of selected lincRNAs and protein-coding genes detec...

Additional file 6: Table S4. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Siyuan Zhan (3308118)
Yao Dong (3308124)
Wei Zhao (14321)
Jiazhong Guo (3308121)
Tao Zhong (501589)
Linjie Wang (152532)
Li Li (14993)
Hongping Zhang (152549)

August 2016

Protein-coding genes detected 10-kb upstream and downstream of the differentially expressed lncRNAs....

Additional file 3: of Integrative analysis reveals ncRNA-mediated molecular regulatory network driving secondary hair follicle regression in cashmere goats

Guangxian Zhou (2558095)
Danju Kang (5022683)
Sen Ma (2558092)
Xingtao Wang (5022686)
Ye Gao (338234)
Yuxin Yang (694142)
Xiaolong Wang (20235)
Yulin Chen (284451)

March 2018

Figure S1. Raw reads classification for each sample (lncRNAs); Figure S2. Mapped region for each sam...

Additional file 6: of Genome-wide discovery of lincRNAs with spatiotemporal expression patterns in the skin of goat during the cashmere growth cycle

Shen Song (234991)
Min Yang (146229)
Yefang Li (5449097)
Marhaba Rouzi (5449100)
Qianjun Zhao (646306)
Yabin Pu (646304)
Xiaohong He (646305)
Joram Mwacharo (3514079)
Ning Yang (114965)
Yuehui Ma (646309)
Lin Jiang (217766)

June 2018

Table S2. Gene function enrichment analysis based on the GO annotation of DEGs. (XLSX 56 kb

Additional file 9: Table S7. of Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat

Siyuan Zhan (3308118)
Yao Dong (3308124)
Wei Zhao (14321)
Jiazhong Guo (3308121)
Tao Zhong (501589)
Linjie Wang (152532)
Li Li (14993)
Hongping Zhang (152549)

August 2016

Functional enrichment analysis of protein-coding genes co-expressed with lncRNAs. (XLSX 160 kb

Additional file 1: of Filtered reproductive long non-coding RNAs by genome-wide analyses of goat ovary at different estrus periods

Yong Liu (6908)
Bing Qi (492962)
Juan Xie (461923)
Xiaoqing Wu (788978)
Yinghui Ling (838919)
Xinyan Cao (6039290)
Feng Kong (459884)
Jing Xin (183453)
Xin Jiang (6348)
Qiaoqin Wu (5846117)
Wenying Wang (187565)
Qingmei Li (301661)
Shengnan Zhang (1340988)
Fengrui Wu (5639615)
Di Zhang (197959)
Rong Wang (59795)
Xiaorong Zhang (510884)
Wenyong Li (715719)

December 2018

Figure S1. The comparison of features of genomic characteristics between lncRNA/TUCP and mRNA. A. Th...

Additional file 4: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Abstract

Extracted data

Topics

Additional file 4: of Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)

Abstract

Extracted data

Topics

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