Additional file 2: Table S1. of The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Additional file 1: Table S1. of Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda

Gloria Barrera (468025)
Mariano Belaich (3564755)
Manuel Patarroyo (290368)
Laura Villamizar (468026)
Pablo Ghiringhelli (3564758)

November 2015

Potentially expressed ORFs in the genome of SfMNPV ColA. In bold letter are indicated the core genes...

Additional file 1: Table S1. of Structure and transcription of the Helicoverpa armigera densovirus (HaDV2) genome and its expression strategy in LD652 cells

Pengjun Xu (478144)
Robert Graham (823361)
Kenneth Wilson (338426)
Kongming Wu (95075)

February 2017

Primers used in this study. Figure S1. The virus particles and its genome organization. (a) Electron...

Additional file 1: of The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification

Pakorn Aiewsakun (3508907)
Peter Simmonds (191583)

February 2018

Table S1. Viruses used in this study and their associated information. Listing of classified virus s...

Additional file 1: Figure S1. of The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Paola Vaz (76616)
Timothy Mahony (3113472)
Carol Hartley (3068034)
Elizabeth Fowler (3114606)
Nino Ficorilli (776963)
Sang Lee (236493)
James Gilkerson (3068025)
Glenn Browning (3413369)
Joanne Devlin (3491738)

January 2016

Relative transcript levels for the unique hypothetical MaHV-1 ORFs PW1 to PW6 at 4Â h (grey bars) an...

Additional file 3: Table S2. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

Genes conserved among human herpesviruses. List of genes that are functionally conserved across huma...

RESEARCH ARTICLE Open Access The first genome sequence of a metatherian herpesvirus: Macropodid

Paola K. Vaz
Timothy J. Mahony
Carol A. Hartley
Elizabeth V. Fowler
Nino Ficorilli
Sang W. Lee
James R. Gilkerson
Glenn F. Browning
Joanne M. Devlin

August 2016

Background: While many placental herpesvirus genomes have been fully sequenced, the complete genome ...

Additional file 4: Table S3. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

Temporally regulated genes. List of herpesvirus genes categorized as immediate early, early and late...

Additional file 1: of Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand

Nathamon Kosoltanapiwat (785646)
Onrapak Reamtong (1392406)
Tamaki Okabayashi (460054)
Sumate Ampawong (4264681)
Amporn Rungruengkitkun (5868272)
Tipparat Thiangtrongjit (5868275)
Narin Thippornchai (5868278)
Pornsawan Leaungwutiwong (2836934)
Aongart Mahittikorn (714931)
Hirotake Mori (714932)
Thanada Yoohanngoa (5868281)
Prechaya Yamwong (5868284)

October 2018

Table S1. Primers for the orthoreovirus whole-genome sequencing, designed based on sequences of the ...

Additional file 5: Table S4. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

PQS oligonucleotides. Names and sequences of virus PQS oligonucleotides randomly selected for CD spe...

Additional file 1: Table S1. of The genome of Dasychira pudibunda nucleopolyhedrovirus (DapuNPV) reveals novel genetic connection between baculoviruses infecting moths of the Lymantriidae family

Martyna Krejmer (3404465)
Iwona Skrzecz (3404459)
Bartosz Wasag (3404468)
Boguslaw Szewczyk (683553)
Lukasz Rabalski (3404462)

October 2015

Predicted ORFs and repeat regions in the genome of DapuNPV. This file lists the ORFs predicted (with...

The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Vaz, Paola K.
Mahony, Timothy J.
Hartley, Carol A.
Fowler, Elizabeth V.
Ficorilli, Nino
Lee, Sang W.
Gilkerson, James R.
Browning, Glenn F.
Devlin, Joanne M.

January 2016

While many placental herpesvirus genomes have been fully sequenced, the complete genome of a marsupi...

Additional file 1: of Phylogenetic and recombination analysis of the herpesvirus genus varicellovirus

Aaron Kolb (4605769)
Andrew Lewin (4605766)
Ralph Moeller Trane (4605760)
Gillian McLellan (4605757)
Curtis Brandt (4605763)

November 2017

Table S1. Accession numbers for the sequences used in the present study. The species, isolation host...

Additional file 1: of Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Alexander Greninger (3568193)
Giselle Knudsen (203761)
Pavitra Roychoudhury (4720350)
Derek Hanson (4978253)
Ruth Sedlak (4978250)
Hong Xie (133048)
Jon Guan (4978247)
Thuy Nguyen (160049)
Vikas Peddu (4978241)
Michael Boeckh (519462)
Meei-Li Huang (342097)
Linda Cook (398789)
Daniel Depledge (4978244)
Danielle Zerr (4978259)
David Koelle (4978256)
Soren Gantt (632933)
Tetsushi Yoshikawa (847023)
Mary Caserta (4676740)
Joshua Hill (841180)
Keith Jerome (4978262)

March 2018

Table S1. List of samples sequenced in this study and associated accession numbers. (DOCX 72Â kb

Additional file 2: Figure S1. of Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda

Gloria Barrera (468025)
Mariano Belaich (3564755)
Manuel Patarroyo (290368)
Laura Villamizar (468026)
Pablo Ghiringhelli (3564758)

November 2015

Sequence comparisons and structural analysis of homologous regions. The palindromes contained into t...

Additional file 3: of Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Alexander Greninger (3568193)
Giselle Knudsen (203761)
Pavitra Roychoudhury (4720350)
Derek Hanson (4978253)
Ruth Sedlak (4978250)
Hong Xie (133048)
Jon Guan (4978247)
Thuy Nguyen (160049)
Vikas Peddu (4978241)
Michael Boeckh (519462)
Meei-Li Huang (342097)
Linda Cook (398789)
Daniel Depledge (4978244)
Danielle Zerr (4978259)
David Koelle (4978256)
Soren Gantt (632933)
Tetsushi Yoshikawa (847023)
Mary Caserta (4676740)
Joshua Hill (841180)
Keith Jerome (4978262)

March 2018

Figure S2. Phylogenetic tree of HHV-6B complete U90/91 and U94/100 loci. HHV-6B genomes were aligned...

Additional file 1: Table S1. of Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda

Gloria Barrera (468025)
Mariano Belaich (3564755)
Manuel Patarroyo (290368)
Laura Villamizar (468026)
Pablo Ghiringhelli (3564758)

November 2015

Potentially expressed ORFs in the genome of SfMNPV ColA. In bold letter are indicated the core genes...

Additional file 1: Table S1. of Structure and transcription of the Helicoverpa armigera densovirus (HaDV2) genome and its expression strategy in LD652 cells

Pengjun Xu (478144)
Robert Graham (823361)
Kenneth Wilson (338426)
Kongming Wu (95075)

February 2017

Primers used in this study. Figure S1. The virus particles and its genome organization. (a) Electron...

Additional file 1: of The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification

Pakorn Aiewsakun (3508907)
Peter Simmonds (191583)

February 2018

Table S1. Viruses used in this study and their associated information. Listing of classified virus s...

Additional file 1: Figure S1. of The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Paola Vaz (76616)
Timothy Mahony (3113472)
Carol Hartley (3068034)
Elizabeth Fowler (3114606)
Nino Ficorilli (776963)
Sang Lee (236493)
James Gilkerson (3068025)
Glenn Browning (3413369)
Joanne Devlin (3491738)

January 2016

Relative transcript levels for the unique hypothetical MaHV-1 ORFs PW1 to PW6 at 4Â h (grey bars) an...

Additional file 3: Table S2. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

Genes conserved among human herpesviruses. List of genes that are functionally conserved across huma...

RESEARCH ARTICLE Open Access The first genome sequence of a metatherian herpesvirus: Macropodid

Paola K. Vaz
Timothy J. Mahony
Carol A. Hartley
Elizabeth V. Fowler
Nino Ficorilli
Sang W. Lee
James R. Gilkerson
Glenn F. Browning
Joanne M. Devlin

August 2016

Background: While many placental herpesvirus genomes have been fully sequenced, the complete genome ...

Additional file 4: Table S3. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

Temporally regulated genes. List of herpesvirus genes categorized as immediate early, early and late...

Additional file 1: of Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand

Nathamon Kosoltanapiwat (785646)
Onrapak Reamtong (1392406)
Tamaki Okabayashi (460054)
Sumate Ampawong (4264681)
Amporn Rungruengkitkun (5868272)
Tipparat Thiangtrongjit (5868275)
Narin Thippornchai (5868278)
Pornsawan Leaungwutiwong (2836934)
Aongart Mahittikorn (714931)
Hirotake Mori (714932)
Thanada Yoohanngoa (5868281)
Prechaya Yamwong (5868284)

October 2018

Table S1. Primers for the orthoreovirus whole-genome sequencing, designed based on sequences of the ...

Additional file 5: Table S4. of Genome-wide analysis of G-quadruplexes in herpesvirus genomes

Banhi Biswas (3429866)
Manish Kandpal (3429863)
Utkarsh Jauhari (3429869)
Perumal Vivekanandan (698238)

November 2016

PQS oligonucleotides. Names and sequences of virus PQS oligonucleotides randomly selected for CD spe...

Additional file 1: Table S1. of The genome of Dasychira pudibunda nucleopolyhedrovirus (DapuNPV) reveals novel genetic connection between baculoviruses infecting moths of the Lymantriidae family

Martyna Krejmer (3404465)
Iwona Skrzecz (3404459)
Bartosz Wasag (3404468)
Boguslaw Szewczyk (683553)
Lukasz Rabalski (3404462)

October 2015

Predicted ORFs and repeat regions in the genome of DapuNPV. This file lists the ORFs predicted (with...

The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Vaz, Paola K.
Mahony, Timothy J.
Hartley, Carol A.
Fowler, Elizabeth V.
Ficorilli, Nino
Lee, Sang W.
Gilkerson, James R.
Browning, Glenn F.
Devlin, Joanne M.

January 2016

While many placental herpesvirus genomes have been fully sequenced, the complete genome of a marsupi...

Additional file 1: of Phylogenetic and recombination analysis of the herpesvirus genus varicellovirus

Aaron Kolb (4605769)
Andrew Lewin (4605766)
Ralph Moeller Trane (4605760)
Gillian McLellan (4605757)
Curtis Brandt (4605763)

November 2017

Table S1. Accession numbers for the sequences used in the present study. The species, isolation host...

Additional file 1: of Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Alexander Greninger (3568193)
Giselle Knudsen (203761)
Pavitra Roychoudhury (4720350)
Derek Hanson (4978253)
Ruth Sedlak (4978250)
Hong Xie (133048)
Jon Guan (4978247)
Thuy Nguyen (160049)
Vikas Peddu (4978241)
Michael Boeckh (519462)
Meei-Li Huang (342097)
Linda Cook (398789)
Daniel Depledge (4978244)
Danielle Zerr (4978259)
David Koelle (4978256)
Soren Gantt (632933)
Tetsushi Yoshikawa (847023)
Mary Caserta (4676740)
Joshua Hill (841180)
Keith Jerome (4978262)

March 2018

Table S1. List of samples sequenced in this study and associated accession numbers. (DOCX 72Â kb

Additional file 2: Figure S1. of Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda

Gloria Barrera (468025)
Mariano Belaich (3564755)
Manuel Patarroyo (290368)
Laura Villamizar (468026)
Pablo Ghiringhelli (3564758)

November 2015

Sequence comparisons and structural analysis of homologous regions. The palindromes contained into t...

Additional file 3: of Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Alexander Greninger (3568193)
Giselle Knudsen (203761)
Pavitra Roychoudhury (4720350)
Derek Hanson (4978253)
Ruth Sedlak (4978250)
Hong Xie (133048)
Jon Guan (4978247)
Thuy Nguyen (160049)
Vikas Peddu (4978241)
Michael Boeckh (519462)
Meei-Li Huang (342097)
Linda Cook (398789)
Daniel Depledge (4978244)
Danielle Zerr (4978259)
David Koelle (4978256)
Soren Gantt (632933)
Tetsushi Yoshikawa (847023)
Mary Caserta (4676740)
Joshua Hill (841180)
Keith Jerome (4978262)

March 2018

Figure S2. Phylogenetic tree of HHV-6B complete U90/91 and U94/100 loci. HHV-6B genomes were aligned...

Additional file 1: Table S1. of Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda

Gloria Barrera (468025)
Mariano Belaich (3564755)
Manuel Patarroyo (290368)
Laura Villamizar (468026)
Pablo Ghiringhelli (3564758)

November 2015

Potentially expressed ORFs in the genome of SfMNPV ColA. In bold letter are indicated the core genes...

Additional file 1: Table S1. of Structure and transcription of the Helicoverpa armigera densovirus (HaDV2) genome and its expression strategy in LD652 cells

Pengjun Xu (478144)
Robert Graham (823361)
Kenneth Wilson (338426)
Kongming Wu (95075)

February 2017

Primers used in this study. Figure S1. The virus particles and its genome organization. (a) Electron...

Additional file 1: of The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification

Pakorn Aiewsakun (3508907)
Peter Simmonds (191583)

February 2018

Table S1. Viruses used in this study and their associated information. Listing of classified virus s...

Additional file 2: Table S1. of The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Abstract

Extracted data

Additional file 2: Table S1. of The first genome sequence of a metatherian herpesvirus: Macropodid herpesvirus 1

Abstract

Extracted data

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