Additional file 16: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Additional file 12: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes tolerant or susceptible to salinity. Circos ...

Additional file 11: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes resistant or susceptible to Botrytis grey mo...

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Thudi, M.
Khan, A.W.
Kumar, V.
Gaur, P.M.
Katta, K.
Garg, V.
Roorkiwal, M.
Samineni, S.
Varshney, R.K.

January 2016

Background Chickpea (Cicer arietinum L.) is the second most important grain legume cultivated by ...

Additional file 14: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of line specific variations in coding region identified in each chickpeaÂ genotype. (XLSX 12...

Additional file 4: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Pairwise SNPs identified among 35 chickpea genotypes used in this study. (XLSX 17Â kb

Additional file 1: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Details on geographic origin, market class and pedigree information of 35 chickpea genotypes used in...

Additional file 7: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of Indel lengths and their respective counts across the genome. (XLSX 9Â kb

Additional file 2: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of data generated for 35 chickpea genotypes and aligned to reference genome of chickpea (CDC...

Additional file 6: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of homozygous and heterozygous SNPs identified in 35 chickpea genotypes. (XLSX 11Â kb

Additional file 3: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Distribution of SNPs, Indels and their effects in the chickpea genome (Ca1-Ca8). (DOCX 14Â kb

Additional file 20: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Classification of homozygous SNPs using SNPEff program in 35 chickpea genotypes. (XLSX 12Â kb

Additional file 10: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Gene deletion detected in 35 chickpea genotypes used in this study. (XLSX 67Â kb

Additional file 19: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Classification of heterozygous SNPs using SNPEff program in 35 chickpea genotypes. (XLSX 12Â kb

Additional file 23: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of variations identified in the â QTL-hotspot â region reported by Varshney et al. [6, 8...

Additional file 5: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Homozygous and heterozygous SNPs identified in each chickpea genotype used in the study. Maximum het...

Additional file 12: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes tolerant or susceptible to salinity. Circos ...

Additional file 11: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes resistant or susceptible to Botrytis grey mo...

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Thudi, M.
Khan, A.W.
Kumar, V.
Gaur, P.M.
Katta, K.
Garg, V.
Roorkiwal, M.
Samineni, S.
Varshney, R.K.

January 2016

Background Chickpea (Cicer arietinum L.) is the second most important grain legume cultivated by ...

Additional file 14: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of line specific variations in coding region identified in each chickpeaÂ genotype. (XLSX 12...

Additional file 4: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Pairwise SNPs identified among 35 chickpea genotypes used in this study. (XLSX 17Â kb

Additional file 1: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Details on geographic origin, market class and pedigree information of 35 chickpea genotypes used in...

Additional file 7: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of Indel lengths and their respective counts across the genome. (XLSX 9Â kb

Additional file 2: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of data generated for 35 chickpea genotypes and aligned to reference genome of chickpea (CDC...

Additional file 6: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of homozygous and heterozygous SNPs identified in 35 chickpea genotypes. (XLSX 11Â kb

Additional file 3: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Distribution of SNPs, Indels and their effects in the chickpea genome (Ca1-Ca8). (DOCX 14Â kb

Additional file 20: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Classification of homozygous SNPs using SNPEff program in 35 chickpea genotypes. (XLSX 12Â kb

Additional file 10: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Gene deletion detected in 35 chickpea genotypes used in this study. (XLSX 67Â kb

Additional file 19: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Classification of heterozygous SNPs using SNPEff program in 35 chickpea genotypes. (XLSX 12Â kb

Additional file 23: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Summary of variations identified in the â QTL-hotspot â region reported by Varshney et al. [6, 8...

Additional file 5: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Homozygous and heterozygous SNPs identified in each chickpea genotype used in the study. Maximum het...

Additional file 12: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes tolerant or susceptible to salinity. Circos ...

Additional file 11: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Mahendar Thudi (196121)
Aamir Khan (3467267)
Vinay Kumar (178313)
Pooran Gaur (3467276)
Krishnamohan Katta (3467273)
Vanika Garg (710693)
Manish Roorkiwal (560200)
Srinivasan Samineni (3467270)
Rajeev Varshney (3467279)

January 2016

Genome-wide variations identified in chickpea genotypes resistant or susceptible to Botrytis grey mo...

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Thudi, M.
Khan, A.W.
Kumar, V.
Gaur, P.M.
Katta, K.
Garg, V.
Roorkiwal, M.
Samineni, S.
Varshney, R.K.

January 2016

Background Chickpea (Cicer arietinum L.) is the second most important grain legume cultivated by ...

Additional file 16: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Abstract

Extracted data

Additional file 16: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Abstract

Extracted data

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