Additional file 3: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Additional file 6: Figure S2. of Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication

Yun-Mei Wang (4358425)
Hai-Bo Xu (4358434)
Ming-Shan Wang (583506)
Newton Otecko (4358431)
Ling-Qun Ye (4358428)
Dong-Dong Wu (53954)
Ya-Ping Zhang (53956)

August 2017

Length and exon number comparisons between lincRNA and protein-coding transcripts in human and mouse...

Additional file 5 of Computational prediction of lncRNA-mRNA interactions by integrating tissue specificity in human transcriptome

Junichi Iwakiri (2953893)
Goro Terai (406)
Michiaki Hamada (355897)

June 2017

Number of tissue-specific lncRNA and mRNAs detected as outlier expression by applying ROKU [12] to R...

Additional file 3: of Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

Jenny Chen (165315)
Alexander Shishkin (3095226)
Xiaopeng Zhu (16758)
Sabah Kadri (190360)
Itay Maza (3485990)
Mitchell Guttman (78794)
Jacob Hanna (23165)
Aviv Regev (147110)
Manuel Garber (3485987)

February 2016

Bed file of lncRNAs discovered from mouse (mm9), human (hg19), chimp/bonobo (panTro4), and rat (rn5)...

Additional file 9: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

LCL de novo lncRNA loci annotation (2,611 loci): BED12 formatted file can be directly uploaded into ...

Additional file 7: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

A List of robust lncRNA transcripts in granulocytes (2,825 transcripts): columns are formatted as a ...

Additional file 2: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

A Human granulocyte samples sequenced in this study. B List of human granulocyte RNA-seq datasets pr...

Additional file 1: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

Supplemental Figures (S1-S35) with legends and Supplemental Methods. (PDF 8255 kb

Additional file 20: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Conserved LncRNAs. The 39 groups of orthologous genes across all five species are listed with the as...

Additional file 1: of Long non-coding RNAs have age-dependent diurnal expression that coincides with age-related changes in genome-wide facultative heterochromatin

Jinhee Park (672569)
William Belden (5907128)

October 2018

TopHat2/Cufflinks revealed 146,910 transcripts/isoforms with the min-isoform-fraction (-F) set to 0....

Additional file 2: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

Genomic coordinates of lncRNAs. Data include genomic coordinates of the 2,632 lncRNAs with start, en...

Additional file 7: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

List of protein-coding genes correlated with lncRNAs. Each protein-coding gene co-expressed with a n...

Additional file 4: Table S3. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

Siyuan Liu (696701)
Tomasz Nowakowski (3477926)
Alex Pollen (3477911)
Jan Lui (3477923)
Max Horlbeck (3477914)
Frank Attenello (3477929)
Daniel He (3477920)
Jonathan Weissman (3477932)
Arnold Kriegstein (3477917)
Aaron Diaz (177561)
Daniel Lim (155222)

April 2016

Related to Figure S1. Table of novel lncRNAs not annotated in Ensembl release 75. Gene names and coo...

Additional file 12: Figure S6. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

Siyuan Liu (696701)
Tomasz Nowakowski (3477926)
Alex Pollen (3477911)
Jan Lui (3477923)
Max Horlbeck (3477914)
Frank Attenello (3477929)
Daniel He (3477920)
Jonathan Weissman (3477932)
Arnold Kriegstein (3477917)
Aaron Diaz (177561)
Daniel Lim (155222)

April 2016

Single cell transcriptomics of lncRNA expression in K562 cell cultures. A Distributions of median ln...

Additional file 14: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

lncRNAs overlapping and correlated with known datasets. Data showing results for each lncRNA analyze...

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Kornienko, Aleksandra
Dotter, Christoph
Guenzl, Philipp
Gisslinger, Heinz
Gisslinger, Bettina
Cleary, Ciara
Kralovics, Robert
Pauler, Florian
Barlow, Denise

January 2016

Background: Long non-coding RNAs (lncRNAs) are increasingly implicated as gene regulators and may ul...

Additional file 6: Figure S2. of Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication

Yun-Mei Wang (4358425)
Hai-Bo Xu (4358434)
Ming-Shan Wang (583506)
Newton Otecko (4358431)
Ling-Qun Ye (4358428)
Dong-Dong Wu (53954)
Ya-Ping Zhang (53956)

August 2017

Length and exon number comparisons between lincRNA and protein-coding transcripts in human and mouse...

Additional file 5 of Computational prediction of lncRNA-mRNA interactions by integrating tissue specificity in human transcriptome

Junichi Iwakiri (2953893)
Goro Terai (406)
Michiaki Hamada (355897)

June 2017

Number of tissue-specific lncRNA and mRNAs detected as outlier expression by applying ROKU [12] to R...

Additional file 3: of Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

Jenny Chen (165315)
Alexander Shishkin (3095226)
Xiaopeng Zhu (16758)
Sabah Kadri (190360)
Itay Maza (3485990)
Mitchell Guttman (78794)
Jacob Hanna (23165)
Aviv Regev (147110)
Manuel Garber (3485987)

February 2016

Bed file of lncRNAs discovered from mouse (mm9), human (hg19), chimp/bonobo (panTro4), and rat (rn5)...

Additional file 9: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

LCL de novo lncRNA loci annotation (2,611 loci): BED12 formatted file can be directly uploaded into ...

Additional file 7: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

A List of robust lncRNA transcripts in granulocytes (2,825 transcripts): columns are formatted as a ...

Additional file 2: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

A Human granulocyte samples sequenced in this study. B List of human granulocyte RNA-seq datasets pr...

Additional file 1: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Aleksandra Kornienko (3460565)
Christoph Dotter (3460553)
Philipp Guenzl (196932)
Heinz Gisslinger (471239)
Bettina Gisslinger (471226)
Ciara Cleary (3460562)
Robert Kralovics (180148)
Florian Pauler (3460559)
Denise Barlow (3460556)

January 2016

Supplemental Figures (S1-S35) with legends and Supplemental Methods. (PDF 8255 kb

Additional file 20: of Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species

Colin Kern (5766899)
Ying Wang (11406)
James Chitwood (243864)
Ian Korf (3780)
Mary Delany (5766902)
Hans Cheng (3418421)
Juan Medrano (3562292)
Alison Van Eenennaam (5766905)
Catherine Ernst (5766908)
Pablo Ross (5492783)
Huaijun Zhou (244952)

September 2018

Conserved LncRNAs. The 39 groups of orthologous genes across all five species are listed with the as...

Additional file 1: of Long non-coding RNAs have age-dependent diurnal expression that coincides with age-related changes in genome-wide facultative heterochromatin

Jinhee Park (672569)
William Belden (5907128)

October 2018

TopHat2/Cufflinks revealed 146,910 transcripts/isoforms with the min-isoform-fraction (-F) set to 0....

Additional file 2: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

Genomic coordinates of lncRNAs. Data include genomic coordinates of the 2,632 lncRNAs with start, en...

Additional file 7: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

List of protein-coding genes correlated with lncRNAs. Each protein-coding gene co-expressed with a n...

Additional file 4: Table S3. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

Siyuan Liu (696701)
Tomasz Nowakowski (3477926)
Alex Pollen (3477911)
Jan Lui (3477923)
Max Horlbeck (3477914)
Frank Attenello (3477929)
Daniel He (3477920)
Jonathan Weissman (3477932)
Arnold Kriegstein (3477917)
Aaron Diaz (177561)
Daniel Lim (155222)

April 2016

Related to Figure S1. Table of novel lncRNAs not annotated in Ensembl release 75. Gene names and coo...

Additional file 12: Figure S6. of Single-cell analysis of long non-coding RNAs in the developing human neocortex

Siyuan Liu (696701)
Tomasz Nowakowski (3477926)
Alex Pollen (3477911)
Jan Lui (3477923)
Max Horlbeck (3477914)
Frank Attenello (3477929)
Daniel He (3477920)
Jonathan Weissman (3477932)
Arnold Kriegstein (3477917)
Aaron Diaz (177561)
Daniel Lim (155222)

April 2016

Single cell transcriptomics of lncRNA expression in K562 cell cultures. A Distributions of median ln...

Additional file 14: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

Akanksha Verma (3553664)
Yanwen Jiang (103833)
Wei Du (88790)
Lauren Fairchild (3553661)
Ari Melnick (88754)
Olivier Elemento (7617)

November 2015

lncRNAs overlapping and correlated with known datasets. Data showing results for each lncRNA analyze...

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Kornienko, Aleksandra
Dotter, Christoph
Guenzl, Philipp
Gisslinger, Heinz
Gisslinger, Bettina
Cleary, Ciara
Kralovics, Robert
Pauler, Florian
Barlow, Denise

January 2016

Background: Long non-coding RNAs (lncRNAs) are increasingly implicated as gene regulators and may ul...

Additional file 6: Figure S2. of Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication

Yun-Mei Wang (4358425)
Hai-Bo Xu (4358434)
Ming-Shan Wang (583506)
Newton Otecko (4358431)
Ling-Qun Ye (4358428)
Dong-Dong Wu (53954)
Ya-Ping Zhang (53956)

August 2017

Length and exon number comparisons between lincRNA and protein-coding transcripts in human and mouse...

Additional file 5 of Computational prediction of lncRNA-mRNA interactions by integrating tissue specificity in human transcriptome

Junichi Iwakiri (2953893)
Goro Terai (406)
Michiaki Hamada (355897)

June 2017

Number of tissue-specific lncRNA and mRNAs detected as outlier expression by applying ROKU [12] to R...

Additional file 3: of Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

Jenny Chen (165315)
Alexander Shishkin (3095226)
Xiaopeng Zhu (16758)
Sabah Kadri (190360)
Itay Maza (3485990)
Mitchell Guttman (78794)
Jacob Hanna (23165)
Aviv Regev (147110)
Manuel Garber (3485987)

February 2016

Bed file of lncRNAs discovered from mouse (mm9), human (hg19), chimp/bonobo (panTro4), and rat (rn5)...

Additional file 3: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Abstract

Extracted data

Additional file 3: of Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans

Abstract

Extracted data

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