MOESM9 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

MOESM9 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 9. High-resolution version of Fig.Â 5a with continuous labeling of all bacterial bin...

MOESM5 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 5: Table S1. Process parameters of the biogas fermenter at time of sampling. These d...

MOESM1 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

Athaydes Leite (3575552)
Leandro Janke (3575555)
Hauke Harms (1606666)
Hans-Hermann Richnow (1645897)
Marcell Nikolausz (3575549)

July 2016

Additional file 1: Figure S1. Duplicate T-RFLP profiles of the methanogenic community dynamics for e...

MOESM4 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 4. Input files used for the network Representation of the Biogas Functional Organiza...

MOESM1 of Genetic repertoires of anaerobic microbiomes driving generation of biogas

Anja Grohmann (5776346)
Yevhen Vainshtein (592162)
Ellen Euchner (5776355)
Christian Grumaz (3444344)
Dieter Bryniok (5776358)
Ralf Rabus (2556805)
Kai Sohn (532753)

September 2018

Additional file 1. Summary of metagenomic (DNA) and metatranscriptomic (RNA) sequenced samples

MOESM5 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 5. Functional characterization of the GBs according to SEED. (“SEED” worksheet) GBs ...

MOESM6 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 6. Functional characterization of the GBs according to COG. (“COG_gene_numb” workshe...

MOESM9 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

R. Heyer (3447260)
D. Benndorf (3447257)
F. Kohrs (3447248)
J. Vrieze (3447251)
N. Boon (3447242)
M. Hoffmann (2683429)
E. Rapp (3447254)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
U. Reichl (3447245)

July 2016

Additional file 9: Tables S1, S2 and S3. S1: Microbial orders for the four main groups of BGPs, name...

MOESM1 of Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

Irena Maus (3490166)
Andreas Bremges (492421)
Yvonne Stolze (3490184)
Sarah Hahnke (3490160)
Katharina Cibis (3490178)
Daniela Koeck (3490163)
Yong Kim (199695)
Jana Kreubel (3490181)
Julia Hassa (4589605)
Daniel Wibberg (839038)
Aaron Weimann (4589602)
Sandra Off (3490157)
Robbin Stantscheff (4589608)
Vladimir Zverlov (3490175)
Wolfgang Schwarz (2739610)
Helmut KĂśnig (4589635)
Wolfgang Liebl (246504)
Paul Scherer (3490172)
Alice McHardy (4589611)
Alexander Sczyrba (16021)
Michael Klocke (1624867)
Alfred PĂźhler (3538337)
Andreas SchlĂźter (3447287)

November 2017

Additional file 1. Fragment recruitment of metagenome sequences derived from four biogas-producing m...

MOESM3 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

R. Heyer (3447260)
D. Benndorf (3447257)
F. Kohrs (3447248)
J. Vrieze (3447251)
N. Boon (3447242)
M. Hoffmann (2683429)
E. Rapp (3447254)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
U. Reichl (3447245)

July 2016

Additional file 3: Figure S2. Number of identified spectra for each BGP (average of triplicates). Ea...

MOESM2 of Genetic repertoires of anaerobic microbiomes driving generation of biogas

Anja Grohmann (5776346)
Yevhen Vainshtein (592162)
Ellen Euchner (5776355)
Christian Grumaz (3444344)
Dieter Bryniok (5776358)
Ralf Rabus (2556805)
Kai Sohn (532753)

September 2018

Additional file 2. Summary of genomic bins including estimated profile completeness, number of deduc...

New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters

Campanaro, Stefano
Treu, Laura
Rodriguez-R, Luis M
Kovalovszki, Adam
Ziels, Ryan M
Maus, Irena
Zhu, Xinyu
Kougias, Panagiotis G
Basile, Arianna
Luo, Gang
Schlüter, Andreas
Konstantinidis, Konstantinos T
Angelidaki, Irini

February 2020

Background: Microorganisms in biogas reactors are essential for degradation of organic matter and m...

DOI 10.1186/s13068-016-0441-1

Metagenomic Analysis
Stefano Campanaro
Laura Treu
Panagiotis G. Kougias
Davide De Francisci
Giorgio Valle
Irini Angelidaki

August 2016

characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binni...

Genetic repertoires of anaerobic microbiomes driving generation of biogas

Grohmann, Anja
Vainshtein, Yevhen
Euchner, Ellen
Grumaz, Christian
Bryniok, Dieter
Rabus, Ralf
Sohn, Kai

January 2018

Background: Biogas production is an attractive technology for a sustainable generation of renewable ...

MOESM3 of Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors

Irena Maus (3490166)
Madis Rumming (539007)
Ingo Bergmann (746712)
Kathrin Heeg (5424674)
Marcel Pohl (5424668)
Edith Nettmann (5424671)
Sebastian Jaenicke (231774)
Jochen Blom (104512)
Alfred PĂźhler (3538337)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
Michael Klocke (1624867)

June 2018

Additional file 3. Sequencing and assembly statistics of the metagenome data for the microbial commu...

MOESM9 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 9. High-resolution version of Fig.Â 5a with continuous labeling of all bacterial bin...

MOESM5 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 5: Table S1. Process parameters of the biogas fermenter at time of sampling. These d...

MOESM1 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

Athaydes Leite (3575552)
Leandro Janke (3575555)
Hauke Harms (1606666)
Hans-Hermann Richnow (1645897)
Marcell Nikolausz (3575549)

July 2016

Additional file 1: Figure S1. Duplicate T-RFLP profiles of the methanogenic community dynamics for e...

MOESM4 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 4. Input files used for the network Representation of the Biogas Functional Organiza...

MOESM1 of Genetic repertoires of anaerobic microbiomes driving generation of biogas

Anja Grohmann (5776346)
Yevhen Vainshtein (592162)
Ellen Euchner (5776355)
Christian Grumaz (3444344)
Dieter Bryniok (5776358)
Ralf Rabus (2556805)
Kai Sohn (532753)

September 2018

Additional file 1. Summary of metagenomic (DNA) and metatranscriptomic (RNA) sequenced samples

MOESM5 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 5. Functional characterization of the GBs according to SEED. (“SEED” worksheet) GBs ...

MOESM6 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Stefano Campanaro (31123)
Laura Treu (1506499)
Panagiotis Kougias (3579245)
Davide Francisci (3579242)
Giorgio Valle (31124)
Irini Angelidaki (1261989)

February 2016

Additional file 6. Functional characterization of the GBs according to COG. (“COG_gene_numb” workshe...

MOESM9 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

R. Heyer (3447260)
D. Benndorf (3447257)
F. Kohrs (3447248)
J. Vrieze (3447251)
N. Boon (3447242)
M. Hoffmann (2683429)
E. Rapp (3447254)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
U. Reichl (3447245)

July 2016

Additional file 9: Tables S1, S2 and S3. S1: Microbial orders for the four main groups of BGPs, name...

MOESM1 of Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

Irena Maus (3490166)
Andreas Bremges (492421)
Yvonne Stolze (3490184)
Sarah Hahnke (3490160)
Katharina Cibis (3490178)
Daniela Koeck (3490163)
Yong Kim (199695)
Jana Kreubel (3490181)
Julia Hassa (4589605)
Daniel Wibberg (839038)
Aaron Weimann (4589602)
Sandra Off (3490157)
Robbin Stantscheff (4589608)
Vladimir Zverlov (3490175)
Wolfgang Schwarz (2739610)
Helmut KĂśnig (4589635)
Wolfgang Liebl (246504)
Paul Scherer (3490172)
Alice McHardy (4589611)
Alexander Sczyrba (16021)
Michael Klocke (1624867)
Alfred PĂźhler (3538337)
Andreas SchlĂźter (3447287)

November 2017

Additional file 1. Fragment recruitment of metagenome sequences derived from four biogas-producing m...

MOESM3 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

R. Heyer (3447260)
D. Benndorf (3447257)
F. Kohrs (3447248)
J. Vrieze (3447251)
N. Boon (3447242)
M. Hoffmann (2683429)
E. Rapp (3447254)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
U. Reichl (3447245)

July 2016

Additional file 3: Figure S2. Number of identified spectra for each BGP (average of triplicates). Ea...

MOESM2 of Genetic repertoires of anaerobic microbiomes driving generation of biogas

Anja Grohmann (5776346)
Yevhen Vainshtein (592162)
Ellen Euchner (5776355)
Christian Grumaz (3444344)
Dieter Bryniok (5776358)
Ralf Rabus (2556805)
Kai Sohn (532753)

September 2018

Additional file 2. Summary of genomic bins including estimated profile completeness, number of deduc...

New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters

Campanaro, Stefano
Treu, Laura
Rodriguez-R, Luis M
Kovalovszki, Adam
Ziels, Ryan M
Maus, Irena
Zhu, Xinyu
Kougias, Panagiotis G
Basile, Arianna
Luo, Gang
Schlüter, Andreas
Konstantinidis, Konstantinos T
Angelidaki, Irini

February 2020

Background: Microorganisms in biogas reactors are essential for degradation of organic matter and m...

DOI 10.1186/s13068-016-0441-1

Metagenomic Analysis
Stefano Campanaro
Laura Treu
Panagiotis G. Kougias
Davide De Francisci
Giorgio Valle
Irini Angelidaki

August 2016

characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binni...

Genetic repertoires of anaerobic microbiomes driving generation of biogas

Grohmann, Anja
Vainshtein, Yevhen
Euchner, Ellen
Grumaz, Christian
Bryniok, Dieter
Rabus, Ralf
Sohn, Kai

January 2018

Background: Biogas production is an attractive technology for a sustainable generation of renewable ...

MOESM3 of Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors

Irena Maus (3490166)
Madis Rumming (539007)
Ingo Bergmann (746712)
Kathrin Heeg (5424674)
Marcel Pohl (5424668)
Edith Nettmann (5424671)
Sebastian Jaenicke (231774)
Jochen Blom (104512)
Alfred PĂźhler (3538337)
Andreas SchlĂźter (3447287)
Alexander Sczyrba (16021)
Michael Klocke (1624867)

June 2018

Additional file 3. Sequencing and assembly statistics of the metagenome data for the microbial commu...

MOESM9 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 9. High-resolution version of Fig.Â 5a with continuous labeling of all bacterial bin...

MOESM5 of Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

Simon GĂźllert (3477017)
Martin Fischer (409025)
Dmitrij Turaev (392320)
Britta Noebauer (3477020)
Nele Ilmberger (627953)
Bernd Wemheuer (627958)
Malik Alawi (627959)
Thomas Rattei (13991)
Rolf Daniel (113374)
Ruth Schmitz (238072)
Adam Grundhoff (121733)
Wolfgang Streit (3477023)

June 2016

Additional file 5: Table S1. Process parameters of the biogas fermenter at time of sampling. These d...

MOESM1 of Lessons learned from the microbial ecology resulting from different inoculation strategies for biogas production from waste products of the bioethanol/sugar industry

Athaydes Leite (3575552)
Leandro Janke (3575555)
Hauke Harms (1606666)
Hans-Hermann Richnow (1645897)
Marcell Nikolausz (3575549)

July 2016

Additional file 1: Figure S1. Duplicate T-RFLP profiles of the methanogenic community dynamics for e...

MOESM9 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Abstract

Extracted data

MOESM9 of Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

Abstract

Extracted data

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