<p>A) GC-rich motif (CGSCNGSCGKYGCCGSCGSYG) identified that is commonly found in regions of ultra-low sequencing depth of coverage in our MTB isolate analysis. B) AGNTYWRANCT Motif described by Adey <i>et al (</i>[<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0148676#pone.0148676.ref023" target="_blank">23</a>]).</p
<p>From top to bottom: the slopes of the occurrence-preference correlation between trinucleotide-mot...
<p>(A) Sequence logo of the degenerate 11-mer motif over-represented in the close vicinity (±15 bp) ...
<p>Second codon positions show low variability due to purifying selection on non-synonymous changes....
<p>At the top are plotted the R<sup>2</sup>s and the slopes of the correlations between codon occurr...
<p>The correlation between the GC content at the three codon positions of human genes and the sum of...
<p>There is considerable variation in average GC content across species, which makes it relevant as ...
<p>A) Boxplots show the distribution of GC content of APOBEC-resistant (left) and APOBEC-vulnerable ...
<p>The percentage of reads for the top twenty 3-mers at the 5′ breakpoint across all samples. Four h...
<p>Black and white figure of the genomes from the Gold Database at the Joint Genome Institute. This ...
AbstractWe have analyzed the distribution of guanine—cytosine (GC) content around the translation in...
AbstractWe have analyzed the distribution of guanine—cytosine (GC) content around the translation in...
<p>Gene signature enrichments in the meta-profiles were assessed with a hypergeometric test. Shown a...
Comparative motif analysis using 400 bp upstream of the start codon as target sequence. The number o...
<p>In GC-rich genomes 3<sup>rd</sup> codon positions are even more GC-rich than intergenic regions, ...
<p>This is a plot of the raw data pulled down from the JGI websites on bacterial and archaeal genome...
<p>From top to bottom: the slopes of the occurrence-preference correlation between trinucleotide-mot...
<p>(A) Sequence logo of the degenerate 11-mer motif over-represented in the close vicinity (±15 bp) ...
<p>Second codon positions show low variability due to purifying selection on non-synonymous changes....
<p>At the top are plotted the R<sup>2</sup>s and the slopes of the correlations between codon occurr...
<p>The correlation between the GC content at the three codon positions of human genes and the sum of...
<p>There is considerable variation in average GC content across species, which makes it relevant as ...
<p>A) Boxplots show the distribution of GC content of APOBEC-resistant (left) and APOBEC-vulnerable ...
<p>The percentage of reads for the top twenty 3-mers at the 5′ breakpoint across all samples. Four h...
<p>Black and white figure of the genomes from the Gold Database at the Joint Genome Institute. This ...
AbstractWe have analyzed the distribution of guanine—cytosine (GC) content around the translation in...
AbstractWe have analyzed the distribution of guanine—cytosine (GC) content around the translation in...
<p>Gene signature enrichments in the meta-profiles were assessed with a hypergeometric test. Shown a...
Comparative motif analysis using 400 bp upstream of the start codon as target sequence. The number o...
<p>In GC-rich genomes 3<sup>rd</sup> codon positions are even more GC-rich than intergenic regions, ...
<p>This is a plot of the raw data pulled down from the JGI websites on bacterial and archaeal genome...
<p>From top to bottom: the slopes of the occurrence-preference correlation between trinucleotide-mot...
<p>(A) Sequence logo of the degenerate 11-mer motif over-represented in the close vicinity (±15 bp) ...
<p>Second codon positions show low variability due to purifying selection on non-synonymous changes....