<p>Branch colour indicates on which island transmission and evolution takes place, while tip label colour indicates cluster membership based on snipping the WPGMA dendrogram at height 0.0071. Only islands with at least one infected vertex are displayed. Vertex and edge colours are matched with tip label and branch colours, respectively. A white vertex with a teal frame is infected, but undiagnosed. A white vertex with frame color matching that of the island is uninfected.</p
<p>The color of edges represents the probability of their existence, while the color of each node re...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>In the present work we consider three different models of pathogen evolution within an outbreak: ...
<p>Branch colour indicates on which island transmission and evolution takes place, while tip label c...
We compare trees from outbreaks on networks with mean degrees and for infection rates β = 0.05 and...
In this example, two data streams are considered: the spatial locations of the cases (A) and a phylo...
<p>A: Phylogenetic tree from the NATSAL network, corresponding to the pathogen prevalence in panels ...
<p>This simulation consisted of 1019 cases of which 119 (12%) were infected by other cases. In total...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The red dots show infected vertices and the green dots represent susceptible vertices. The inset ...
The relationship between the underlying contact network over which a pathogen spreads and the pathog...
<p>Panel A shows the Sackin index as a measure of tree imbalance. Panel B shows the size of the epid...
<p>The circles represent the epidemic threshold from our simulation, and the lines the predictions o...
Contact structure is believed to have a large impact on epidemic spreading and consequently using ne...
<p>The color of edges represents the probability of their existence, while the color of each node re...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>In the present work we consider three different models of pathogen evolution within an outbreak: ...
<p>Branch colour indicates on which island transmission and evolution takes place, while tip label c...
We compare trees from outbreaks on networks with mean degrees and for infection rates β = 0.05 and...
In this example, two data streams are considered: the spatial locations of the cases (A) and a phylo...
<p>A: Phylogenetic tree from the NATSAL network, corresponding to the pathogen prevalence in panels ...
<p>This simulation consisted of 1019 cases of which 119 (12%) were infected by other cases. In total...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The red dots show infected vertices and the green dots represent susceptible vertices. The inset ...
The relationship between the underlying contact network over which a pathogen spreads and the pathog...
<p>Panel A shows the Sackin index as a measure of tree imbalance. Panel B shows the size of the epid...
<p>The circles represent the epidemic threshold from our simulation, and the lines the predictions o...
Contact structure is believed to have a large impact on epidemic spreading and consequently using ne...
<p>The color of edges represents the probability of their existence, while the color of each node re...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>In the present work we consider three different models of pathogen evolution within an outbreak: ...