<p>Branch colour indicates on which island transmission and evolution takes place, while tip label colour indicates cluster membership based on snipping the WPGMA dendrogram at height 0.007. Only islands with at least one infected vertex are displayed. Vertex and edge colours are matched with tip label and branch colours, respectively. A white vertex with a teal frame is infected, but undiagnosed. A white vertex with frame color matching that of the island is uninfected.</p
Contact structure is believed to have a large impact on epidemic spreading and consequently using ne...
<p>Panel A. Baseline injecting network including all injecting ties reported in baseline interviews ...
The links are labeled by the nucleotide positions to designate transitions; transversions are furthe...
<p>Branch colour indicates on which island transmission and evolution takes place, while tip label c...
We compare trees from outbreaks on networks with mean degrees and for infection rates β = 0.05 and...
In this example, two data streams are considered: the spatial locations of the cases (A) and a phylo...
<p>This simulation consisted of 1019 cases of which 119 (12%) were infected by other cases. In total...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
<p>A: Phylogenetic tree from the NATSAL network, corresponding to the pathogen prevalence in panels ...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The red dots show infected vertices and the green dots represent susceptible vertices. The inset ...
The relationship between the underlying contact network over which a pathogen spreads and the pathog...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>Panel A shows the Sackin index as a measure of tree imbalance. Panel B shows the size of the epid...
<p>The circles represent the epidemic threshold from our simulation, and the lines the predictions o...
Contact structure is believed to have a large impact on epidemic spreading and consequently using ne...
<p>Panel A. Baseline injecting network including all injecting ties reported in baseline interviews ...
The links are labeled by the nucleotide positions to designate transitions; transversions are furthe...
<p>Branch colour indicates on which island transmission and evolution takes place, while tip label c...
We compare trees from outbreaks on networks with mean degrees and for infection rates β = 0.05 and...
In this example, two data streams are considered: the spatial locations of the cases (A) and a phylo...
<p>This simulation consisted of 1019 cases of which 119 (12%) were infected by other cases. In total...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
<p>A: Phylogenetic tree from the NATSAL network, corresponding to the pathogen prevalence in panels ...
<p>The program BEAST was used to recreate phylogeny (Bayesian skyline) of the viral <i>env</i> seque...
<p>The red dots show infected vertices and the green dots represent susceptible vertices. The inset ...
The relationship between the underlying contact network over which a pathogen spreads and the pathog...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>Panel A shows the Sackin index as a measure of tree imbalance. Panel B shows the size of the epid...
<p>The circles represent the epidemic threshold from our simulation, and the lines the predictions o...
Contact structure is believed to have a large impact on epidemic spreading and consequently using ne...
<p>Panel A. Baseline injecting network including all injecting ties reported in baseline interviews ...
The links are labeled by the nucleotide positions to designate transitions; transversions are furthe...