Additional file 4 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells

Additional file 4: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

Marco Cavalli (736487)
Nicholas Baltzer (3298332)
Gang Pan (317143)
JosĂŠ BĂĄrcenas Walls (6648467)
Karolina Smolinska Garbulowska (6648470)
Chanchal Kumar (23899)
Stanko Skrtic (707913)
Jan Komorowski (80237)
Claes Wadelius (189132)

April 2019

Figure S4. UCSC Genome browser view of the AS-SNPs rs4886705 (yellow) which is a reported eQTL in th...

The use of stable isotopes in the study of human pathophysiology

Charidemou, E
Ashmore, T
Griffin, JL

July 2017

The growing prevalence of metabolic diseases including fatty liver disease and Type 2 diabetes has i...

Additional file 1 of Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model

Stephanie Stransky (5105336)
Ronald Cutler (5393411)
Jennifer Aguilan (8656941)
Edward Nieves (118164)
Simone Sidoli (167157)

November 2022

Additional file 1: Fig. S1. Spheroids express proteins characteristic of the human liver. (A) Size d...

Additional file 3 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells

Nadia Battello (3551528)
Andreas Zimmer (78836)
Carole Goebel (3557186)
Xiangyi Dong (1844347)
Iris Behrmann (378331)
Claude Haan (378330)
Karsten Hiller (9893)
Andre Wegner (3551537)

February 2016

Figure S2. (A) Glucose uptake and lactate secretion rates in PH5CH8 immortalized hepatocytes in resp...

Additional file 1 of Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis

Daniel Weindl (1844341)
Thekla Cordes (3551531)
Nadia Battello (3551528)
Sean Sapcariu (3551534)
Xiangyi Dong (1844347)
Andre Wegner (3551537)
Karsten Hiller (9893)

April 2016

Supplemental information. List of isotopically enriched compounds and their mass isotopomer distribu...

Additional file 7: of eIF2α phosphorylation is required to prevent hepatocyte death and liver fibrosis in mice challenged with a high fructose diet

Woo-Gyun Choi (4321081)
Jaeseok Han (561532)
Ji-Hyeon Kim (4321087)
Mi-Jeong Kim (263016)
Jae-Woo Park (382876)
Benbo Song (4321084)
Hee-Jeong Cha (4321090)
Hye-Seon Choi (447803)
Hun-Taeg Chung (583329)
In-Kyu Lee (12898)
Tae-Sik Park (435718)
Maria Hatzoglou (211224)
Hueng-Sik Choi (12900)
Hyun Yoo (4321078)
Randal Kaufman (3529154)
Sung Back (4321075)

August 2017

The severity of HFrD-mediated damage is higher in middle-aged A/A Hep mice. (a) The data (serum ALT ...

Additional file 6: of eIF2α phosphorylation is required to prevent hepatocyte death and liver fibrosis in mice challenged with a high fructose diet

Woo-Gyun Choi (4321081)
Jaeseok Han (561532)
Ji-Hyeon Kim (4321087)
Mi-Jeong Kim (263016)
Jae-Woo Park (382876)
Benbo Song (4321084)
Hee-Jeong Cha (4321090)
Hye-Seon Choi (447803)
Hun-Taeg Chung (583329)
In-Kyu Lee (12898)
Tae-Sik Park (435718)
Maria Hatzoglou (211224)
Hueng-Sik Choi (12900)
Hyun Yoo (4321078)
Randal Kaufman (3529154)
Sung Back (4321075)

August 2017

eIF2α phosphorylation in adult mice prevents hepatocyte death induced by a long-term HFrD. (a) Hemat...

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data

Foguet, Carles
Marin, Silvia
Selivanov, Vitaly,
Fanchon, Eric
Lee, Wai-Nang Paul
Guinovart, Joan J.
de Atauri, Pedro
Cascante, Marta

April 2016

International audienceThe liver performs many essential metabolic functions, which can be studied us...

HepatoDyn: a dynamic model of hepatocyte metabolism that integrates 13C isotopomer data

Foguet, Carles
Marín Martínez, Silvia
Selivanov, Vitaly A.
Fanchon, Eric
Lee, Paul W. N.
Guinovart, Joan J. (Joan Josep), 1947-
Atauri Carulla, Ramón de
Cascante i Serratosa, Marta

The liver performs many essential metabolic functions, which can be studied using computational mode...

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data

Carles Foguet (2635447)
Silvia Marin (2635450)
Vitaly A. Selivanov (133548)
Eric Fanchon (203783)
Wai-Nang Paul Lee (2397607)
Joan J. Guinovart (143816)
Pedro de Atauri (515923)
Marta Cascante (67954)

April 2016

<div>The liver performs many essential metabolic functions, which can be studied using computatio...

Additional file 1: of Hepatic protein Carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro

Peerut Chienwichai (6521324)
Onrapak Reamtong (1392406)
Usa Boonyuen (2548708)
Trairak Pisitkun (390908)
Poorichaya Somparn (4096939)
Prapin Tharnpoophasiam (6521327)
Suwalee Worakhunpiset (6521330)
Supachai Topanurak (6521333)

March 2019

Figure S1. Percentage of HepG2 cell proliferation of FA treatment in the presence of different conce...

Additional file 1: Supporting Figures and Tables. of The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment

Lucas Vu (4166128)
Sophia Orbach (4166119)
W. Ray (4166122)
Margaret Cassin (4166125)
Padmavathy Rajagopalan (233580)
Richard Helm (336251)

June 2017

Protein list for the pairwise comparison of 3DHL vs. 3DH. The original figure from the manuscript is...

Additional file 4: Figure S1. of Short chain acyl-CoA dehydrogenase deficiency and short-term high-fat diet perturb mitochondrial energy metabolism and transcriptional control of lipid-handling in liver

Sujoy Ghosh (51427)
Claudia Kruger (141215)
Shawna Wicks (3514187)
Jacob Simon (647144)
K. Kumar (581379)
William Johnson (442720)
Randall Mynatt (575941)
Robert Noland (3514199)
Brenda Richards (3514193)

March 2016

Quantification of mtDNA in Acads−/− and Acads+/+ liver. Legend: Relative amount of DNA from two mito...

The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells.

Battello, Nadia
Zimmer, Andreas David
Goebel, Carole
Dong, Xiangyi
Behrmann, Iris
Haan, Claude
Hiller, Karsten
Wegner, Andre

January 2016

BACKGROUND: Hypoxia and inflammation have been identified as hallmarks of cancer. A majority of hepa...

Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions

de Mas, Igor Marin
Selivanov, Vitaly A.
Marin, Silvia
Roca, Josep
Orešič, Matej
Agius, Loranne
Cascante, Marta

January 2011

Background: Stable isotope tracers are used to assess metabolic flux profiles in living cells. The e...

Additional file 4: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

Marco Cavalli (736487)
Nicholas Baltzer (3298332)
Gang Pan (317143)
JosĂŠ BĂĄrcenas Walls (6648467)
Karolina Smolinska Garbulowska (6648470)
Chanchal Kumar (23899)
Stanko Skrtic (707913)
Jan Komorowski (80237)
Claes Wadelius (189132)

April 2019

Figure S4. UCSC Genome browser view of the AS-SNPs rs4886705 (yellow) which is a reported eQTL in th...

The use of stable isotopes in the study of human pathophysiology

Charidemou, E
Ashmore, T
Griffin, JL

July 2017

The growing prevalence of metabolic diseases including fatty liver disease and Type 2 diabetes has i...

Additional file 1 of Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model

Stephanie Stransky (5105336)
Ronald Cutler (5393411)
Jennifer Aguilan (8656941)
Edward Nieves (118164)
Simone Sidoli (167157)

November 2022

Additional file 1: Fig. S1. Spheroids express proteins characteristic of the human liver. (A) Size d...

Additional file 3 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells

Nadia Battello (3551528)
Andreas Zimmer (78836)
Carole Goebel (3557186)
Xiangyi Dong (1844347)
Iris Behrmann (378331)
Claude Haan (378330)
Karsten Hiller (9893)
Andre Wegner (3551537)

February 2016

Figure S2. (A) Glucose uptake and lactate secretion rates in PH5CH8 immortalized hepatocytes in resp...

Additional file 1 of Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis

Daniel Weindl (1844341)
Thekla Cordes (3551531)
Nadia Battello (3551528)
Sean Sapcariu (3551534)
Xiangyi Dong (1844347)
Andre Wegner (3551537)
Karsten Hiller (9893)

April 2016

Supplemental information. List of isotopically enriched compounds and their mass isotopomer distribu...

Additional file 7: of eIF2α phosphorylation is required to prevent hepatocyte death and liver fibrosis in mice challenged with a high fructose diet

Woo-Gyun Choi (4321081)
Jaeseok Han (561532)
Ji-Hyeon Kim (4321087)
Mi-Jeong Kim (263016)
Jae-Woo Park (382876)
Benbo Song (4321084)
Hee-Jeong Cha (4321090)
Hye-Seon Choi (447803)
Hun-Taeg Chung (583329)
In-Kyu Lee (12898)
Tae-Sik Park (435718)
Maria Hatzoglou (211224)
Hueng-Sik Choi (12900)
Hyun Yoo (4321078)
Randal Kaufman (3529154)
Sung Back (4321075)

August 2017

The severity of HFrD-mediated damage is higher in middle-aged A/A Hep mice. (a) The data (serum ALT ...

Additional file 6: of eIF2α phosphorylation is required to prevent hepatocyte death and liver fibrosis in mice challenged with a high fructose diet

Woo-Gyun Choi (4321081)
Jaeseok Han (561532)
Ji-Hyeon Kim (4321087)
Mi-Jeong Kim (263016)
Jae-Woo Park (382876)
Benbo Song (4321084)
Hee-Jeong Cha (4321090)
Hye-Seon Choi (447803)
Hun-Taeg Chung (583329)
In-Kyu Lee (12898)
Tae-Sik Park (435718)
Maria Hatzoglou (211224)
Hueng-Sik Choi (12900)
Hyun Yoo (4321078)
Randal Kaufman (3529154)
Sung Back (4321075)

August 2017

eIF2α phosphorylation in adult mice prevents hepatocyte death induced by a long-term HFrD. (a) Hemat...

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data

Foguet, Carles
Marin, Silvia
Selivanov, Vitaly,
Fanchon, Eric
Lee, Wai-Nang Paul
Guinovart, Joan J.
de Atauri, Pedro
Cascante, Marta

April 2016

International audienceThe liver performs many essential metabolic functions, which can be studied us...

HepatoDyn: a dynamic model of hepatocyte metabolism that integrates 13C isotopomer data

Foguet, Carles
Marín Martínez, Silvia
Selivanov, Vitaly A.
Fanchon, Eric
Lee, Paul W. N.
Guinovart, Joan J. (Joan Josep), 1947-
Atauri Carulla, Ramón de
Cascante i Serratosa, Marta

The liver performs many essential metabolic functions, which can be studied using computational mode...

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data

Carles Foguet (2635447)
Silvia Marin (2635450)
Vitaly A. Selivanov (133548)
Eric Fanchon (203783)
Wai-Nang Paul Lee (2397607)
Joan J. Guinovart (143816)
Pedro de Atauri (515923)
Marta Cascante (67954)

April 2016

<div>The liver performs many essential metabolic functions, which can be studied using computatio...

Additional file 1: of Hepatic protein Carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro

Peerut Chienwichai (6521324)
Onrapak Reamtong (1392406)
Usa Boonyuen (2548708)
Trairak Pisitkun (390908)
Poorichaya Somparn (4096939)
Prapin Tharnpoophasiam (6521327)
Suwalee Worakhunpiset (6521330)
Supachai Topanurak (6521333)

March 2019

Figure S1. Percentage of HepG2 cell proliferation of FA treatment in the presence of different conce...

Additional file 1: Supporting Figures and Tables. of The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment

Lucas Vu (4166128)
Sophia Orbach (4166119)
W. Ray (4166122)
Margaret Cassin (4166125)
Padmavathy Rajagopalan (233580)
Richard Helm (336251)

June 2017

Protein list for the pairwise comparison of 3DHL vs. 3DH. The original figure from the manuscript is...

Additional file 4: Figure S1. of Short chain acyl-CoA dehydrogenase deficiency and short-term high-fat diet perturb mitochondrial energy metabolism and transcriptional control of lipid-handling in liver

Sujoy Ghosh (51427)
Claudia Kruger (141215)
Shawna Wicks (3514187)
Jacob Simon (647144)
K. Kumar (581379)
William Johnson (442720)
Randall Mynatt (575941)
Robert Noland (3514199)
Brenda Richards (3514193)

March 2016

Quantification of mtDNA in Acads−/− and Acads+/+ liver. Legend: Relative amount of DNA from two mito...

The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells.

Battello, Nadia
Zimmer, Andreas David
Goebel, Carole
Dong, Xiangyi
Behrmann, Iris
Haan, Claude
Hiller, Karsten
Wegner, Andre

January 2016

BACKGROUND: Hypoxia and inflammation have been identified as hallmarks of cancer. A majority of hepa...

Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions

de Mas, Igor Marin
Selivanov, Vitaly A.
Marin, Silvia
Roca, Josep
Orešič, Matej
Agius, Loranne
Cascante, Marta

January 2011

Background: Stable isotope tracers are used to assess metabolic flux profiles in living cells. The e...

Additional file 4: of Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

Marco Cavalli (736487)
Nicholas Baltzer (3298332)
Gang Pan (317143)
JosĂŠ BĂĄrcenas Walls (6648467)
Karolina Smolinska Garbulowska (6648470)
Chanchal Kumar (23899)
Stanko Skrtic (707913)
Jan Komorowski (80237)
Claes Wadelius (189132)

April 2019

Figure S4. UCSC Genome browser view of the AS-SNPs rs4886705 (yellow) which is a reported eQTL in th...

The use of stable isotopes in the study of human pathophysiology

Charidemou, E
Ashmore, T
Griffin, JL

July 2017

The growing prevalence of metabolic diseases including fatty liver disease and Type 2 diabetes has i...

Additional file 1 of Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model

Stephanie Stransky (5105336)
Ronald Cutler (5393411)
Jennifer Aguilan (8656941)
Edward Nieves (118164)
Simone Sidoli (167157)

November 2022

Additional file 1: Fig. S1. Spheroids express proteins characteristic of the human liver. (A) Size d...

Additional file 4 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells

Abstract

Extracted data

Additional file 4 of The role of HIF-1 in oncostatin M-dependent metabolic reprogramming of hepatic cells

Abstract

Extracted data

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