<p>The network was obtained from the nucleotide sequences of Unique Long, Internal Repeat and Unique Short regions of ILTV genome using SplitsTree4 [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0149529#pone.0149529.ref046" target="_blank">46</a>] based on the neighbor-net method [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0149529#pone.0149529.ref047" target="_blank">47</a>]. The Italian field strains (in red) and the vaccine strains (in green) are closely related to the American CEO vaccines; in the zoomed inset, the split separating the field strains from all the other genomes is highlighted in red, while the one grouping them to the American virulent strain 63140 is in blue.</p
<p>(A) Haplotype network constructed from the <i>Collema</i>-type <i>trnL</i> P6b regions with the p...
<p>Color code is as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074546...
<p>Cross connections indicate probable reticulation events like hybridisation, recombination and hor...
<p>Phylogenetic networks were generated from nucleotide alignments of the complete genome sequences ...
<p>Phylogenetic networks from nucleotide sequence alignments on complete genomes (A), the U<sub>L</s...
<p>Maximum likelihood phylogenetic trees were generated using alignments of nucleotide sequences of ...
Networks of evolving genotypes can be constructed from the worldwide time-resolved genotyping of pat...
<p>The network was computed using SplitsTree software. EqualAngle was employed for splits transforma...
<p>To generate the split-network, single nucleotide variants in concatenated multiple alignments of ...
<p>The HSV-1 strains in the network form the same six clades as in <a href="http://www.plosone.org/a...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>The formation of a net (pointed by the arrow) in <i>A</i> depicts genetic relatedness between seq...
<p>A bushy network structure is observed indicating homologous recombination. # = DSTs presenting am...
Viral evolution is characterized by high rates of horizontal gene transfer and fast sequence diverge...
<p>SplitsTree v4 NeigborNet analysis of 77 <i>V. parahaemolyticus</i> isolates based on 7 concatenat...
<p>(A) Haplotype network constructed from the <i>Collema</i>-type <i>trnL</i> P6b regions with the p...
<p>Color code is as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074546...
<p>Cross connections indicate probable reticulation events like hybridisation, recombination and hor...
<p>Phylogenetic networks were generated from nucleotide alignments of the complete genome sequences ...
<p>Phylogenetic networks from nucleotide sequence alignments on complete genomes (A), the U<sub>L</s...
<p>Maximum likelihood phylogenetic trees were generated using alignments of nucleotide sequences of ...
Networks of evolving genotypes can be constructed from the worldwide time-resolved genotyping of pat...
<p>The network was computed using SplitsTree software. EqualAngle was employed for splits transforma...
<p>To generate the split-network, single nucleotide variants in concatenated multiple alignments of ...
<p>The HSV-1 strains in the network form the same six clades as in <a href="http://www.plosone.org/a...
<p>Each coloured box represents a neutral network, where although a number of different amino acid s...
<p>The formation of a net (pointed by the arrow) in <i>A</i> depicts genetic relatedness between seq...
<p>A bushy network structure is observed indicating homologous recombination. # = DSTs presenting am...
Viral evolution is characterized by high rates of horizontal gene transfer and fast sequence diverge...
<p>SplitsTree v4 NeigborNet analysis of 77 <i>V. parahaemolyticus</i> isolates based on 7 concatenat...
<p>(A) Haplotype network constructed from the <i>Collema</i>-type <i>trnL</i> P6b regions with the p...
<p>Color code is as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0074546...
<p>Cross connections indicate probable reticulation events like hybridisation, recombination and hor...